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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgatatttaccttcttggctacttccggctgatacaatctttagttgttgcacatgcttgtgggtgaactttgaaaaatatgatgattccttgcatggatttttgcattcagGCAGTACTTTGTTAATGTAGACGATTCTGTGGCTCAAAAG

Basic information

species Vitis vinifera
transcript Vv04s0008g00520.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161705826|gb|FC057103.1|FC057103
EST:     ACTTATCCCAATCAGTTGCAGACGAACCCCGCATATTCAGTTGTTAA                         GCAGTACTTTGTTAATGTAGACGATTCTGTGGCTCAAAAG
genomic: ACTTATCCCAATCAGTTGCAGACGAACCCCGCATATTCAGTTGTTAAgtaagttgat ... ttgcattcagGCAGTACTTTGTTAATGTAGACGATTCTGTGGCTCAAAAG
EST: gi|161716176|gb|FC068064.1|FC068064
EST:     ACTTATCCCAATCAGTTGCAGACGAACCCCGCATATTCAGTTGTTAA                         GCAGTACTTTGTTAATGTAGACGATTCTGTGGCTCAAAAG
genomic: ACTTATCCCAATCAGTTGCAGACGAACCCCGCATATTCAGTTGTTAAgtaagttgat ... ttgcattcagGCAGTACTTTGTTAATGTAGACGATTCTGTGGCTCAAAAG
EST: gi|110718348|gb|EE095077.1|EE095077
EST:     ACTTATCCCAATCAGTTGCAGACGAACCCCGCATATTCAGTTGTTAA                         GCAGTACTTTGTTAATGTAGACGATTCTGTGGCTCAAAAG
genomic: ACTTATCCCAATCAGTTGCAGACGAACCCCGCATATTCAGTTGTTAAgtaagttgat ... ttgcattcagGCAGTACTTTGTTAATGTAGACGATTCTGTGGCTCAAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgggtgaactttgaaaaatatgatgattccttgcatggatttttgcattcagGCAGTACTTTGTTAATGTAGACGATTCTGTGGCTCAAAAG
                                          tttttgc  CT-rich tract
         aactttgaaaaatat  TA-rich tract