1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgttgcaaaatcaatcaatacattttgttcttctatttacaagtgttatacttgcatattatgtcctacataccttactgaaccttggtttttttcgcagGTGTGGAGGCTTGTTACAAACTTTTTTTTCCTTGGAAAATTTTCAATCAATTTTGGAATTCGCCTCTTAATGAT
species | Vitis vinifera |
transcript | Vv04s0008g00510.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCCTATGTATACCGCTTTAATATATGAATTGGTATTCAAGCATTTTCAG GTGTGGAGGCTTGTTACAAACNNNNNNNNCCTTGGAAAATTTTCAATCAATEST: gi|161721005|gb|FC069627.1|FC069627
genomic: CGCCTATGTATACCGCTTTAATATATGAATTGGTATTCAAGCATTTTCAGgtatggaatg ... tttttcgcagGTGTGGAGGCTTGTTACAAACTTTTTTTTCCTTGGAAAATTTTCAATCAAT
EST: CGCCTATGTATACCGCTTTAATATATGAATTGGTATTCAAGCATTTTCAG GTGTGGAGGCTTGTTACAAACNNNNNNNNCCTTGGAAAATTTTCAATCAAT
genomic: CGCCTATGTATACCGCTTTAATATATGAATTGGTATTCAAGCATTTTCAGgtatggaatg ... tttttcgcagGTGTGGAGGCTTGTTACAAACTTTTTTTTCCTTGGAAAATTTTCAATCAAT
ttatacttgcatattatgtcctacataccttactgaaccttggtttttttcgcagGTGTGGAGGCTTGTTACAAACTTTTTTTTCCTTGGAAAATTTTCAATCAATTTTGGAATTCGCCTCTTAATGAT
accttac putative branch site (score: 3)
ccttggtttttttc putative PPT
atattatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttgcaaaatcaatcaatacattttgttcttctatttacaagtgttatacttgcatattatgtcctacataccttactgaaccttggtttttttcgcagGTGTGGAGGCTTGTTACAAACTTTTTTTTCCTTGGAAAATTTTCAATCAATTTTGGAATTCGCCTCTTAATGAT
tgttgca
- - - -aaatcaa
- - - - - - - -caataca
- - - - - - - - - - - - - - - - - - - -caagtgt
- - - - - - - - - - - - - - - - - - - - - - - - - cttgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtcc