Sequence
atgc intronic sequence ATGC exonic sequencegtccattttcatcttgttgtctgattcttttgatggttttcttgtttgcttacatgcctttgttaaaaaaagttcatacgaataaaggggcattacaaaacaaatcagttctcatgatatagGATGCTGCTATGGCATTGCTATTTGGAGTGGGATATGCTGGAATAATTTTTGAAGAATCTCTAGCCTTTAACAAAAGTGGAGTGGGGTTATTGATGGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0180g00120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G053927_T01 (Zea mays), 3'ss of exon 2
---gtccattttcatcttgttgtctga---ttcttttgatggttttcttgtttgcttacatgcctttgttaaaaaaagttcatacgaataaaggggcattacaaaacaaatcagtt------ctcatgatatagGATGCTGCTATGGCATTGCTATTTGGAGTGGGATATGCTGGAATAATTTTTGAAGAATCTCTAGCCTTTAACAAAAGTGGAGTGGGGTTATTGATGGCTG
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gtcagctggtttgttgcatctgtccaaaagttcccttatttatcattttaactatgtagtctggctctttctgtttgttatgcacacaacaaggatcattatagcaagcatcattcaaatacttccttctgcagGACATTGCAATGGTGTTGGTTTTTGCTATTGGCTATGCAGGTATCGTTTTTGAGGAATCACTAGCATTTAACAAAAGTGGAGTTGCGTTATTGATGGCTG
upper sequence: Vv03s0180g00120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G40920.1 (Glycine max), 3'ss of exon 2
gtccattttcatcttgttgtctgattcttttgatggttttcttgtttgcttacatgcctttgttaaaaaaagttcatacgaataaaggggcattacaaaacaaatcagttctcatgatat--------agGATGCTGCTATGGCATTGCTATTTGGAGTGGGATATGCTGGAATAATTTTTGAAGAATCTCTAGCCTTTAACAAAAGTGGAGTGGGGTTATTGATGGCTG
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gtacttcaatgtcctctatcctgatttcaatgctgcacatttcat--agtgaagtacgtgtattagggaaaatatctctaaatatgcatattcta-atagttatttgttttccatgacattggactgtagGATCTTGCTATGGCATTGCTATTTGTAATAGGATATGCAGGCATCATATTTGAAGAATCTCTAGCCTTCAATAAAAGTGGAGTGGGACTGTTGATGGCTG
upper sequence: Vv03s0180g00120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G26380.1 (Glycine max), 3'ss of exon 2
gtccattttcatcttgttgtctgattcttttgatggttttcttgtttgcttacatgcctttgttaaaaaaagttcatacgaataaaggggcattacaaaacaaatcagttctc-atgatat--------agGATGCTGCTATGGCATTGCTATTTGGAGTGGGATATGCTGGAATAATTTTTGAAGAATCTCTAGCCTTTAACAAAAGTGGAGTGGGGTTATTGATGGCTG
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gtacttcaatgtcctctatcctgatttcaatgctgcacatttcac--aatgaagtacatgtactagggaaaatgcctctaaatat--gcatattctaatagttatttgttttctatgacatttgactgtagGATCTTGCTATGGCATTGCTATTTGTAATAGGATATGCAGGCATCATATTTGAAGAATCTCCAGCCTTCAATAAAAGTGGAGTGGGACTGTTGATGACTG
upper sequence: Vv03s0180g00120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G19490.1 (Arabidopsis thaliana), 3'ss of exon 2
gtccattttcatcttgttgtctgattcttttgatggttttcttgtttgcttacatgcctttgttaaaaaaagttcatacgaataaaggggcattacaaaacaaatcagttctcatgatatagGATGCTGCTATGGCATTGCTATTTGGAGTGGGATATGCTGGAATAATTTTTGAAGAATCTCTAGCCTTTAACAAAAGTGGAGTGGGGTTATTGATGGCTG
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------------------gtgtgattcttt-----gtttttatgttctttg----gtttcaactcaaaatgcagaattttgattaacaattatctatggacaa------tgttatgttacagGATGTTGCTATGGCATTGTTGTTTGGAATAGGATACGCTGGCATCATCTTTGAAGAGTCTTTAGCTTTTAATAAAAGTGGAATAGGACTTTTGATGGCTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaagttcatacgaataaaggggcattacaaaacaaatcagttctcatgatatagGATGCTGCTATGGCATTGCTATTTGGAGTGGGATATGCTGGAATAATTTTTGAAGAATCTCTAGCCTTTAACAAAAGTGGAGTGGGGTTATTGATGGCTG
ttctcat CT-rich tract
attacaaaacaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtccattttcatcttgttgtctgattcttttgatggttttcttgtttgcttacatgcctttgttaaaaaaagttcatacgaataaaggggcattacaaaacaaatcagttctcatgatatagGATGCTGCTATGGCATTGCTATTTGGAGTGGGATATGCTGGAATAATTTTTGAAGAATCTCTAGCCTTTAACAAAAGTGGAGTGGGGTTATTGATGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG