1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttttgcttaataattgacttggaaaaaaatagaactcactgttatatcagtggattttgtatccaggagggattcttattcttcaataactgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGTCTATCAGGAGTGAATGACAGGGGTCCTTCAAAATATAGTATGAGTGTAA
species | Vitis vinifera |
transcript | Vv03s0091g00700.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGTEST: gi|110713462|gb|EE089402.1|EE089402
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATTTGGATAATGGAGGGATGTGGAGTEST: gi|110686908|gb|EE063865.1|EE063865
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCTGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATTTGGATAATGGAGGGATGTGGAGTEST: gi|28968092|gb|CB347125.1|CB347125
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATTTGGATAATGGAGGGATGTGGAGTEST: gi|26257375|gb|CA808438.1|CA808438
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGTEST: gi|351025662|gb|FQ426676.1|FQ426676
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGTEST: gi|351030338|gb|FQ432276.1|FQ432276
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGTEST: gi|71866707|gb|DT015762.1|DT015762
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATTTGGATAATGGAGGGATGTGGAGTEST: gi|110710998|gb|EE087695.1|EE087695
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATTTGGATAATGGAGGGATGTGGAGTEST: gi|26257779|gb|CA808842.1|CA808842
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: CCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCACCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGTEST: gi|352795065|gb|FQ477175.1|FQ477175
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGTEST: gi|110685602|gb|EE062466.1|EE062466
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGTEST: gi|26264973|gb|CA816036.1|CA816036
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATTTGGATAATGGAGGGATGTGGAGTEST: gi|26258048|gb|CA809111.1|CA809111
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGTEST: gi|26267206|gb|CA818269.1|CA818269
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATTTGGATAATGGAGGGATGTGGAGTEST: gi|18458865|gb|BM437143.1|BM437143
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
EST: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAG GAAAGCATCTCATCTGCTCGGAATTATTTGGATAATGGAGGGATGTGGAGT
genomic: TCATGACAGAAGATAATCCCATTAGCCGGCAGTCAGAAAGAGTTACAGAGgtcatttctt ... ctgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGT
tatcagtggattttgtatccaggagggattcttattcttcaataactgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGTCTATCAGGAGTGAATGACAGGGGTCCTTCAAAATATAGTATGAGTGTAA
caataac putative branch site (score: 2)
ttattcttcaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttgcttaataattgacttggaaaaaaatagaactcactgttatatcagtggattttgtatccaggagggattcttattcttcaataactgttaacagGAAAGCATCTCATCTGCTCGGAATTATATGGATAATGGAGGGATGTGGAGTCTATCAGGAGTGAATGACAGGGGTCCTTCAAAATATAGTATGAGTGTAA
- - - - - - - -tgacttg
- - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - -ctcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatcca