1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcattctttctggaattcaatcaagtcataaattttttttaaagctttttcgtttacttttgtgtcatttcattatgagcccttttgattttaaatgcagGTCTTGAGTTGGAAACCACGAGCTCTCTATTTTCCTCGCTTTGCAACCGCAGAACAATGCCAAAGCATAATTGAAATGGCAAAGTCACACCTTAGACCGT
species | Vitis vinifera |
transcript | Vv03s0091g00520.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCCGCATGGAGAGACTGGGGAGAGTTCTGTTGATATGATCCCATTTCAG GTCTTGAGTTGGAAACCACGAGCTCTCTATTTTCCTCGCTTTGCAACCGCAEST: gi|77585486|gb|DV221831.1|DV221831
genomic: TGCCGCATGGAGAGACTGGGGAGAGTTCTGTTGATATGATCCCATTTCAGgtaattgatg ... ttaaatgcagGTCTTGAGTTGGAAACCACGAGCTCTCTATTTTCCTCGCTTTGCAACCGCA
EST: TGCCGCATGGAGAGACTGGGGAGAGTTCTGTTGATATGATCCCATTTCAG GTCTTGAGTTGGAAACCACGAGCTCTCTATTTTCCTCGCTTTGCAACCGCAEST: gi|30252901|gb|CB970452.1|CB970452
genomic: TGCCGCATGGAGAGACTGGGGAGAGTTCTGTTGATATGATCCCATTTCAGgtaattgatg ... ttaaatgcagGTCTTGAGTTGGAAACCACGAGCTCTCTATTTTCCTCGCTTTGCAACCGCA
EST: TGCCTCATGGAGAGACTGGGGAGGGTTCTGTTGATTTGATCCCATTTCAG GTCTTGAGTTGGAAACCACGAGCTCTCTATTTTCCTCGCTTTGCAACCGCA
genomic: TGCCGCATGGAGAGACTGGGGAGAGTTCTGTTGATATGATCCCATTTCAGgtaattgatg ... ttaaatgcagGTCTTGAGTTGGAAACCACGAGCTCTCTATTTTCCTCGCTTTGCAACCGCA
tttttcgtttacttttgtgtcatttcattatgagcccttttgattttaaatgcagGTCTTGAGTTGGAAACCACGAGCTCTCTATTTTCCTCGCTTTGCAACCGCAGAACAATGCCAAAGCATAATTGAAATGGCAAAGTCACACCTTAGACCGT
ttttgat putative branch site (score: 4)
ttttgattttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattctttctggaattcaatcaagtcataaattttttttaaagctttttcgtttacttttgtgtcatttcattatgagcccttttgattttaaatgcagGTCTTGAGTTGGAAACCACGAGCTCTCTATTTTCCTCGCTTTGCAACCGCAGAACAATGCCAAAGCATAATTGAAATGGCAAAGTCACACCTTAGACCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
gcattct
- - - - - - - - -caatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcccttt