1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gagtaattactggtagaatttaagagaaaattgcagtttgcttctgatgaagttattctattgacaaacttgaatcatgttcaaattgtgctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGTTTTCTCTGATCCATACAAAGTATCTCAGTATAATTGGTGGACTTCCCC
species | Vitis vinifera |
transcript | Vv03s0091g00100.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|352795531|gb|FQ480119.1|FQ480119
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351021600|gb|FQ429704.1|FQ429704
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351015716|gb|FQ431671.1|FQ431671
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351020060|gb|FQ445667.1|FQ445667
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTTEST: gi|351052205|gb|FQ450775.1|FQ450775
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTT-
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|352798346|gb|FQ480371.1|FQ480371
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCACGACACAACAGAGCACAAACGTGCAG TCGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351053009|gb|FQ456616.1|FQ456616
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351052049|gb|FQ455342.1|FQ455342
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|352794035|gb|FQ479277.1|FQ479277
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351052499|gb|FQ456347.1|FQ456347
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351054387|gb|FQ450470.1|FQ450470
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351040809|gb|FQ438353.1|FQ438353
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351027484|gb|FQ444733.1|FQ444733
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351049584|gb|FQ429206.1|FQ429206
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: CAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351033599|gb|FQ447758.1|FQ447758
genomic: CAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351032729|gb|FQ462443.1|FQ462443
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351022326|gb|FQ445101.1|FQ445101
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351026100|gb|FQ428112.1|FQ428112
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351014552|gb|FQ437554.1|FQ437554
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|351016539|gb|FQ423966.1|FQ423966
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: CAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGEST: gi|349832837|gb|FQ422959.1|FQ422959
genomic: CAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
EST: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAG TTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
genomic: TTTCTTCACATCTCTTCTATACCATGACACAACAGAGCACAAACGTGCAGgtaaatgctt ... ctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTG
gatgaagttattctattgacaaacttgaatcatgttcaaattgtgctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGTTTTCTCTGATCCATACAAAGTATCTCAGTATAATTGGTGGACTTCCCC
tattgac putative branch site (score: 2)
ttattctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtaattactggtagaatttaagagaaaattgcagtttgcttctgatgaagttattctattgacaaacttgaatcatgttcaaattgtgctttatgcagTTGCTGAATTTTGTGGAAATGTGGAGTTATGTCGGCACACTGGGCAAGTTGTTTTCTCTGATCCATACAAAGTATCTCAGTATAATTGGTGGACTTCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - ttactgg
- - - - - - - - - - - - agaaaat
- - - - - - - - - - - - - - - -tgcagtt
- - - - - - - - - - - - - - - - - - - tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgttc