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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgactaaccttttcttactcctcattttcttctcttcatattcgcttatgaaactgaaactgctgtttggcaatgcagCTAACTTCTGATCAACCTAATCGCGACGAGGTCGACTTTGAGTTCCTGGGAAATGTGAGTGGGCAGCCATATATCCTTCAAACCAATGTTTTTGCAGACG

Basic information

species Vitis vinifera
transcript Vv03s0088g00650.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0088g00650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G40040.1 (Glycine max), 3'ss of exon 2
gtgagtgactaaccttttcttactcctcattttcttctcttcatatt---cgcttatgaa---actgaaact--gctgtttggcaatgcagCTAACTTCTGATCAACCTAATCGCGACGAGGTCGACTTTGAGTTCCTGGGAAATGTGAGTGGGCAGCCATATATCCTTCAAACCAATGTTTTTGCAGACG
    || |  |||| |||     || |  || |  |   || | ||        |||  |   | |  ||||  ||  | |   | | ||||| || ||||||||||||||||| || ||| | ||||||||||| || || |||||   ||||||||||||||| || ||||| ||| |||| ||||| |
----gtaagcaaccctttacccttcttttttcttattgttttaaatcataaaaatatagactcattttaacttggcaatatattattacagCTTACCTCTGATCAACCTAATCGAGATGAGATAGACTTTGAGTTTCTTGGCAATGTCTCTGGGCAGCCATATATTCTACAAACAAATATTTTCGCAGATG

upper sequence: Vv03s0088g00650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G27380.1 (Glycine max), 3'ss of exon 2
gtgagtgactaac--cttttcttactcctcattttcttctcttcatattcgcttatgaa---actgaaact--gctgtttggcaatgcagCTAACTTCTGATCAACCTAATCGCGACGAGGTCGACTTTGAGTTCCTGGGAAATGTGAGTGGGCAGCCATATATCCTTCAAACCAATGTTTTTGCAGACG
|| ||  |||     |  |||||  | || ||| | ||   | |||||     |||  |   | |  ||||  ||  | |   | | ||||| || ||||||||||||||||| || ||| | ||||||||||| || || |||||   ||||||||||||||| || ||||| ||| |||| ||||| |
gttagcaactctttgcccttcttttttctgattgttttgaat-catataaaaatatagactcattctaacttggcaatatattattacagCTTACCTCTGATCAACCTAATCGAGATGAGATAGACTTTGAGTTTCTTGGCAATGTCTCTGGGCAGCCATATATTCTACAAACAAATATTTTCGCAGATG

upper sequence: Vv03s0088g00650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S309_38V6.2 (Physcomitrella patens), 3'ss of exon 3
------------------------------------------------------------------------------------------------------gtgagtgactaaccttttcttactcctcattttcttctcttcatattc---gcttatgaaactgaaactgctgtttggcaatgcagCTAACTTC-TGATCAACCTAATCGC--GACGAGGTCGACTTTGAGTTCCTGGGAAATGTGAGTGGGCAGCCATATATCCTTCAAACCAATGTTTTTGCAGACG
                                                                                                      ||      ||     |   | || || || ||          ||||||      | | |   |  || | |  | ||  | || || |  | ||     || |   ||  |  |||||| | |||||||||||||| |||||||||   |||||||| || ||||| ||||||||||| | |||     
gtaaccccgataccactgacttgactattagtgttctatttcagagatgaagttacgtgcacagaagaattgttgctgttcaattgtctgttctgatttgcagtagcatgctgcgggtagatcacaccgcacttctagagagcaatattctgcaactttcagtttacaaataccttctgtgattgtagATGTCGTCACAGACACCAGGATTACATGACGAGATGGACTTTGAGTTCCTTGGAAATGTGTCGGGGCAGCCCTACATCCTGCAAACCAATGTCTATGCGA---


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcttctcttcatattcgcttatgaaactgaaactgctgtttggcaatgcagCTAACTTCTGATCAACCTAATCGCGACGAGGTCGACTTTGAGTTCCTGGGAAATGTGAGTGGGCAGCCATATATCCTTCAAACCAATGTTTTTGCAGACG
           ttcatatt  TA-rich tract