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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggccttattatccacttggttctgtaattgaatgttttgatgaatatgagaatagatacgtccttttcactgcctaatccatccattacatttccactggctgaacagGATGCTTGTTTATGAATATGTTGACAATGGCAATTTGGAGCAGTGGTTGCATGGTGATGTAGGGCCTGTCAGTCCTCTAACATGGGATATTCGGATGAAG

Basic information

species Vitis vinifera
transcript Vv03s0063g02510.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G01440.1 (Glycine max), 3'ss of exon 2
gtaggccttattatccacttggttctgtaattgaatgttttgatgaatatgagaatagatacgtccttttcactgcctaatccatccattacatttccactggctgaacagGATGCTTGTTTATGAATATGTTGACAATGGCAATTTGGAGCAGTGGTTGCATGGTGATGTAGGGCCTGTCAGTCCTCTAACATGGGATATTCGGATGAAG
                     ||    || |    |    ||    | || |   || || | |    || | ||     || |   |  | | ||   ||| ||   ||||||||||||||||||||||||||||||||| |  ||||| |||||| |||||||||||||||| ||||  || ||  | |||||||||||  | ||||||
---------------------gtaaaatattctgtttgcatgccatacattactgta-attcttttcatttaatgttctttctaatgaagaaacttttgctgactattcagGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTGCATGGTGATGTAGGACCTGCTAGCCCCTTGACATGGGATATAAGAATGAAG

upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G01490.1 (Glycine max), 3'ss of exon 2
gtaggccttattatccacttggt-tctgtaattgaatgtttt---gatgaatatgagaatagatacgtccttttcactgcctaatccatccattacatttccactggctgaacagGATGCTTGTTTATGAATATGTTGACAATGGCAATTTGGAGCAGTGGTTGCATGGTGATGTAGGGCCTGTCAGTCCTCTAACATGGGATATTCGGATGAAG
|||     |  | |   | ||   |   | | || |  | ||     | ||| |     ||   | |    || | ||    ||    |  ||  || ||   ||| |||  ||||||||||||||||||||||||||||||||| |  ||||| |||||| | |||||||||||||| ||||| || ||  |  ||||||||||  | ||||||
gtaaaatattctgtttgcatgccatacattactgtacttcttttcatttaatgtctttctaatgaagaaacttactcta---aaattgtgtatggcacttttgctgactgttcagGATGCTTGTTTATGAATATGTTGACAATGGAACATTGGAACAGTGGCTTCATGGTGATGTAGGACCTGTTAGCCCCTTGCCATGGGATATAAGAATGAAG

upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G04780.1 (Glycine max), 3'ss of exon 2
gtaggccttattatccacttggttctgtaattgaatgttttgatgaatatgagaatagatacgtccttttcactgcctaatccatccattacatttccactggctgaacagGATGCTTGTTTATGAATATGTTGACAATGGCAATTTGGAGCAGTGGTTGCATGGTGATGTAGGGCCTGTCAGTCCTCTAACATGGGATATTCGGATGAAG
    |  || || |          |||| ||  ||||||||   ||  || | | |  | |  |||| |    |   | |     |  ||  | || || |       |||||||||||||||||| ||||||||||| || || ||||| || ||| |||||||||||||||| || || || ||  | |||||||||||||| ||||  
----gtattgttctgtttacatgcctgttat--aatgtttttcagacgataaaagttcagaattcctgtgattttttttaaatgacacttttactttcatt-------cagGATGCTTGTTTATGAGTATGTTGACAACGGAAACTTGGAACAATGGCTGCATGGTGATGTAGGACCAGTTAGCCCCTTGACATGGGATATTCGAATGAGA

upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G12570.1 (Glycine max), 3'ss of exon 2
gta-ggccttattatccacttggttctgtaattgaatgttttgatgaatatgagaatagatacgtcct---tttcactgcctaatccatccattacatttccactggctgaacagGATGCTTGTTTATGAATATGTTGACAATGGCAATTTGGAGCAGTGGTTGCATGGTGATGTAGGGCCTGTCAGTCCTCTAACATGGGATATTCGGATGAAG
||| ||   |  | |  || |||   |     |       |  |||  | | |||  | | | || |    || |  |   |  |   |  || ||| ||  | |  |    |||||||||||||||||| ||||||||||| || || ||||| || ||| |||||||||||||||| || || || ||  | |||||||||||||| ||||  
gtatggttgttctgtttacatggccgttattcttttgacataaatgtttttcagacgataaaagttcagaattcctgtaattttttttttaatgacacttttattttc-attcagGATGCTTGTTTATGAGTATGTTGACAACGGAAACTTGGAACAATGGCTGCATGGTGATGTAGGACCAGTTAGCCCCTTGACATGGGATATTCGAATGAGA

upper sequence: Vv03s0063g02510.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G34500.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaggccttattatccacttggttctgtaattgaatgttttgatgaatatgagaatagatacgtccttttcactgcctaatccatccattacatttccactggctgaacagGATGCTTGTTTATGAATATGTTGACAATGGCAATTTGGAGCAGTGGTTGCATGGTGATGTAGGGCCTGTCAGTCCTCTAACATGGGATATTCGGATGAAG
                   || |  |  ||   ||   |   ||||||     | || |  |    ||   | |     | |  |   ||   | |    |   |||  ||||||||||| ||||||||| |||| ||||| || |||||||||||||| || ||||||||||| || || |||||||| || |||||||| || ||||||
------------------gtgctaatccaaacaaac--tcaaatgaatt----agtaaactctaatttggaattaatctaacagttagttctttctttgttccttgattagGATGCTTGTGTATGAATATATTGATAATGGAAACTTGGAGCAGTGGTTACACGGTGATGTAGGTCCGGTGAGTCCTCTTACGTGGGATATCCGCATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatacgtccttttcactgcctaatccatccattacatttccactggctgaacagGATGCTTGTTTATGAATATGTTGACAATGGCAATTTGGAGCAGTGGTTGCATGGTGATGTAGGGCCTGTCAGTCCTCTAACATGGGATATTCGGATGAAG
                  gcctaat  putative branch site (score: 3)
                               attacattt  TA-rich tract