Sequence
atgc intronic sequence ATGC exonic sequencegtaagtttatgccaccttattctgtggttgaatttgttttctctgtttttcttccttatttggaaattgattcttctgggtctttttttattgtattctcattccagGTCATTACAAAGCTTCTGTATCTACTGAATCAAGGAGAGACATTTACAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G04820.1 (Glycine max), 3'ss of exon 2
gtaagtttatgccaccttattctgtggttgaatttgttttctctgttt-ttcttccttatttggaaattgattcttctgggtctttttttattgtattctcattccagGTCATTACAAAGCTTCTGTATCTACTGAATCAAGGAGAGACATTTACAAAG
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----gtttttcttttattatttt-taattgatcttatgttttcattgtgttattcaatggttggat-ttga--cattgaatttgtttgttatctttttctt-ttccagGTTATCACAAAACTTTTATATCTACTGAATCAGGGAGAGACATTTACAAAG
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G01470.1 (Glycine max), 3'ss of exon 2
gtaagtttatgccaccttattctgtggttgaatttgttttc-tct-gtttttcttccttatttggaaattga-ttcttctgggtctttttttattgtattctcattccagGTCATTACAAAGCTTCTGTATCTACTGAATCAAGGAGAGACATTTACAAAG
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----gtttgtgtcgtc--aatgagaggatgtgtgtgttttcatctagtttctgtaaatgattcagtggttgaattcttgtgctgcttgttttgttatcttgt--ttccagGTTATTACAAAACTCCTATACCTACTGAATCAGGGAGAGACGTTTACAAAG
upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G12610.2 (Glycine max), 3'ss of exon 2
-gtaagtttatgccaccttattctgtggttgaatttgttttctctgtttttcttccttatttggaaattgattcttctgggtctttttttattgtattctcattccagGTCATTACAAAGCTTCTGTATCTACTGAATCAAGGAGAGACATTTACAAAG
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gtttttcttttacctttttatttt-taattgatcttatgttttcattgtgttattcaatggttgaatttgacattgc---atttgtttgtgatctttttcttttccagGTTATCACAAAACTTTTATACCTATTGAATCAGGGAGAGACATTTACAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964857|gb|GW838660.1|GW838660EST: AAGCTAGAGTGTTCAATGATCCTCAGCTTGAGCCAAGGAGATGTTCTCAG GTCATTACAAAGCTTCTGTATCTACTGAATCAAGGAGAGACATTTACAAAG
genomic: AAGCTAGAGTGTTCAATGATCCTCAGCTTGAGCCAAGGAGATGTTCTCAGgtaagtttat ... ctcattccagGTCATTACAAAGCTTCTGTATCTACTGAATCAAGGAGAGACATTTACAAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tccttatttggaaattgattcttctgggtctttttttattgtattctcattccagGTCATTACAAAGCTTCTGTATCTACTGAATCAAGGAGAGACATTTACAAAG
aattgat putative branch site (score: 4)
ttctcattcc putative PPT
tttttttattgtattc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtttatgccaccttattctgtggttgaatttgttttctctgtttttcttccttatttggaaattgattcttctgggtctttttttattgtattctcattccagGTCATTACAAAGCTTCTGTATCTACTGAATCAAGGAGAGACATTTACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA