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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagattctttctttctttctttcaattttgttatctttatagttttctggtataatagaggctaagataactactaaccctttcttcaattgaaatgttcaacatggtttctgcagAATGCAGGTCGAGGTCAGCAAATATACAGAAGGTGTGAATGAAAAGGCAGTTCGACCAAATGGATTGCCTCAGTCACTAATCCGTTATGATG

Basic information

species Vitis vinifera
transcript Vv03s0038g04210.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G19560.1 (Glycine max), 3'ss of exon 2
gtgagattctttctttctttctttcaattttgttatctttatagttttctggtat-aatagaggctaagataactactaaccctttcttcaattgaaatgttcaacatggtttctgcagAATGCAGGTCGAGGTCAGCAAATATACAGAAGGTGTGAATGAAAAGGCAGTTCGACCAAATGGATTGCCTCAGTCACTAATCCGTTATGATG
   | |     | | ||||   |   | ||     | | ||    ||| | |||| | ||   ||| | |||  | || ||   ||         | |  |  |      || || |||||||||||| || || ||||| ||||||||||| ||||||||||||||| | |||||||||||||| ||| ||||| |||| |         
---ataaaggctgtatcttgaatgtgagttctaagtatctaacaatttttagtattagtaacagctgaaata--tgcttactgctt--------aatacatcta------ttactacagAATGCAGGTTGAAGTGAGCAAGTATACAGAAGGCGTGAATGAAAAGGCATTACGACCAAATGGATTACCTAAGTCATTAATTC---------

upper sequence: Vv03s0038g04210.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G33560.1 (Glycine max), 3'ss of exon 2
gtgagattctttctttctttctttcaattttgttatctttatagttttctggtataatagaggctaagataactactaaccctttcttcaattgaaatgttcaacatggtt---tctgcagAATGCAGGTCGAGGTCAGCAAATATACAGAAGGTGTGAATGAAAAGGCAGTTCGACCAAATGGATTGCCTCAGTCACTAATCCGTTATGATG
                |   || | ||  ||   |    || |  | |  | | | || |||   ||| |    ||  |     | | |  ||  |||| | || |  |||    || |||||||||||| ||||| ||||| || ||||||||  |||||||||||||| | |||||||||||||| ||| | ||| |||| ||||||||||
-------------acacaaactcttaagattaacaaagctagaaatgt--gctttcatggaga--aaggttgtaacagattaaatttgc--tt--aatgcttaatacagttattactacagAATGCAGGTTGAGGTGAGCAAGTACACAGAAGGCATGAATGAAAAGGCATTACGACCAAATGGATTACCTAAATCATTAATTCGTTATGATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaagataactactaaccctttcttcaattgaaatgttcaacatggtttctgcagAATGCAGGTCGAGGTCAGCAAATATACAGAAGGTGTGAATGAAAAGGCAGTTCGACCAAATGGATTGCCTCAGTCACTAATCCGTTATGATG
          tactaac  putative branch site (score: 0)
                                              tttctgc  putative PPT
                          aattgaaat  TA-rich tract