Sequence
atgc intronic sequence ATGC exonic sequence...cataatttgttatttttgaccattttcattgtcatttctttttcgcattttgtttaataacatgtattaaaacccttttaattccatcagatatttgcagGACTGTCAATGGCCTTCTGAAAACGGCACTAGGTCCACCTCCTGGTTCTACTACAACCTTGTCTCCCATCCAAGATTTGACATTTCGGCTTGAATCAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G48200.1 (Glycine max), 3'ss of exon 2
cataatttgttatttttgaccattttcattgtcatttctttttcgcattttgtttaataacat-gtattaaaacccttttaattccatcagatatttgcagGACTGTCAATGGCCTTCTGAAAACGGCACTAGGTCCACCTCCTGGTTCTACTACAACCTTGTCTCCCATCCAAGATTTGACATTTCGGCTTGAATCAGTG
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tacaaatc-tagtagacagatttttttatttacttatgtttgtttgattttgtatcttgttttagtatttaaactcttataattccatcagatatttgcagGATTGTCAATGGTCTTCTGAAAACTGCTTTGGGACCACCCACAGGGTCAACCACTGCTTTGTCTCCAGCACAGGATATTACTTTCCGACATGAATCTGTG
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G00230.1 (Glycine max), 3'ss of exon 3
cataatttgttatttttgacca--ttttcattgtcatttctttttcgcattttgtttaataacat-gtattaaaacccttttaattccatcagatatttgcagGACTGTCAATGGCCTTCTGAAAACGGCACTAGGTCCACCTCCTGGTTCTACTACAACCTTGTCTCCCATCCAAGATTTGACATTTCGGCTTGAATCAGTG
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---agtacatatctagtgacagattttttatttacttatgtttgtttgattttgcatcttgttttagtatttaaactcttataattccatcagatatttgcagGATTGTCAATGGTCTTCTGAAAACCGCTTTGGGACCACCTACAGGGTCAACCACTGCTTTGTCTCCAGCACAGGATATTACTTTCCGACATGAATCTGTG
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G38200.1 (Arabidopsis thaliana), 3'ss of exon 2
cataatttgttatttttgaccattttcattgtcatttc-tttttcgcattttg-tttaataacatgtattaaaacccttttaattccatcagatatttgcagGACTGTCAATGGCCTTCTGAAAACGGCACTAGGTCCACCTCCTGGTTCTACTACAACCTTGTCTCCCATCCAAGATTTGACATTTCGGCTTGAATCAGTG
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--caccagggtagcgtacgcggttcatatttgtattccattagtggtgttgtactttaataaagtgtattaaagctcttataattctatcagatgtttgcagGATTGTCAACGGTCTTCTGAAAACTGCTCTAGGGCCTCCTCCTGGTTCATCGACAATATTGTCCCCAGTCCAGGATATTACTTTTCGGCACGAATCTGTG
upper sequence: Vv03s0038g04090.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G35380.1 (Arabidopsis thaliana), 3'ss of exon 1
-cataatttg-ttatttttgaccattttcatt--gtcatttctttttcgcattttgtttaataacatgtattaaaacccttttaattccatcagatatttgcagGACTGTCAATGGCCTTCTGAAAACGGCACTAGGTCCACCTCCTGGTTCTACTACAACCTTGTCTCCCATCCAAGATTTGACATTTCGGCTTGAATCAGTG
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gtattattagattagtctaagaaactgtcacaaaattgttgcatgactcgttaagagtaaatgtaatgtattaaagctcttataattccatcagatacttgcagGATTGTCAACGGTCTTCTCAAAACTGCTCTAGGACCACCCACCGGATCATCAACAACGTTGTCTCCAGCGCAAGATAGTACATTCAGGAATGATTCTGTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34545314|gb|CF513546.1|CF513546EST: ACTATGACTGTGATGTGAATGCTCCAAACATATTTGAAGGATATTTGCAG GACTGTCAATGGCCTTCTGAAAACGGCACTAGGTCCACCTCCTGGTTCTA
genomic: ACTATGACTGTGATGTGAATGCTCCAAACATATTT----GA-A-----AGgtacagagca ... atatttgcagGACTGTCAATGGCCTTCTGAAAACGGCACTAGGTCCACCTCCTGGTTCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattttgtttaataacatgtattaaaacccttttaattccatcagatatttgcagGACTGTCAATGGCCTTCTGAAAACGGCACTAGGTCCACCTCCTGGTTCTACTACAACCTTGTCTCCCATCCAAGATTTGACATTTCGGCTTGAATCAGTG
tgtttaataacatgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cataatttgttatttttgaccattttcattgtcatttctttttcgcattttgtttaataacatgtattaaaacccttttaattccatcagatatttgcagGACTGTCAATGGCCTTCTGAAAACGGCACTAGGTCCACCTCCTGGTTCTACTACAACCTTGTCTCCCATCCAAGATTTGACATTTCGGCTTGAATCAGTG
- - - - - - - - - -ccatttt
- - - - - - - - - - - - - cattgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcag