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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttgctccaccacaattacaatttcatagttttgtctttggatatatgctctgtttggtgtatttacttggttgacctttgctttttttttttttgttttttttgctctcacttgacagGAGCAAAAGTTTTTGATCGGAGTCATCTTAATGGTTCCTTGCTATGCAATTGAATCG

Basic information

species Vitis vinifera
transcript Vv03s0038g03670.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g03670.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G38360.1 (Arabidopsis thaliana), 3'ss of exon 1
gtgttgctccaccacaattacaatttcatagttttgtctttggatatatgctctgtttggtgtatttacttggttgacctttgctttttttttttttgttttttttgctctcacttgacagGAGCAAAAGTTTTTGATCGGAGTCATCTTAATGGTTCCTTGCTATGCAATTGAATCG
                              ||||| ||| |   |     |||| | |  |   | |||||   || | |||   |  ||  ||    |   |  |    || ||   |||||||||||||||||||| ||||||||| | ||||| ||||||||| | |||||||||
------------------------------gttttctctctctct-----ctctttctattccctctactt---tggcttttatatccttgcttaccttaactactatcttctctct-cagGAGCAAAAGTTTTTGATTGGAGTCATCCTCATGGTCCCTTGCTATTCTATTGAATCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37183882|gb|CF603236.1|CF603236
EST:     TCTCAATGTACCTTCTATTTGAGCACCTTTCTTCATACAAGAATCCCGAG                         GAGCAAAAGTTTTTGATCGGAGTCATCTTAATGGTTCCTTGCTATGCAATT
genomic: TCTCAATGTACCTTCTATTTGAGCACCTTTCTTCATACAAGAATCCCGAGgtgttgctcc ... cacttgacagGAGCAAAAGTTTTTGATCGGAGTCATCTTAATGGTTCCTTGCTATGCAATT
EST: gi|161714620|gb|FC064217.1|FC064217
EST:     TCTCAATGTACCTTCTATTTGAGCACCTTTCTTCATACAAGAATCCCGAG                         GAGCAAAAGTTTTTGATCGGAGTCATCTTAATGGTTCCTTGCTATGCAATT
genomic: TCTCAATGTACCTTCTATTTGAGCACCTTTCTTCATACAAGAATCCCGAGgtgttgctcc ... cacttgacagGAGCAAAAGTTTTTGATCGGAGTCATCTTAATGGTTCCTTGCTATGCAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttggttgacctttgctttttttttttttgttttttttgctctcacttgacagGAGCAAAAGTTTTTGATCGGAGTCATCTTAATGGTTCCTTGCTATGCAATTGAATCG
                                         ctctcac  putative branch site (score: 3)
           cctttgcttttttttt  CT-rich tract
             tttgcttttttttttt  TA-rich tract