Sequence
atgc intronic sequence ATGC exonic sequencegtcttgtctttattattgtgtactgcacttaaagataacttctgatttttgcaaacacaactgtaagcacaaattaaagttttatggtttagcatgggcacaatttgtagtaattgtggatactataattaccgaattttaaatttgtagTAATCTAGCTAGGATAGAGAGGAGTGCACAAAAACATGCAAAATCTGGCACCGATAATGTTGGGTGGTATGACAAGTGGCAAGGAAATCATTCACTGTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0038g02700.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G02120.1 (Glycine max), 3'ss of exon 5
gtcttgtctttattattgtgtactgcacttaaagataacttctgatttttgcaaacacaactgtaagcacaaattaaagttttatggtttagcatgggcacaatttgtagtaattgtggatactataattaccgaattttaaatttgtagTAATCTAGCTAGGATAGAGAGGAGTGCACAAAAACATGCAAAATCTGGCACCGATAATGTTGGGTGGTATGACAAGTGGCAAGGAAATCATTCACTGTCC
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--------------------------------------------------------------gtcattatatttctctgctt----gttgtgaataggtaaaacctctg--aattcttgacacaatgccttgc-atttttaaatttgcagTAACATAGCAAGAATAGAAAGAAGTGCACAAAAACAAGCAAAATCAGGAACTGAAAATGCTGGATGGTATGAAAAATG----------------------
upper sequence: Vv03s0038g02700.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G02020.1 (Glycine max), 3'ss of exon 5
gtcttgtctttattattgtgtactgcacttaaagataacttctgatttttgcaaacacaactgtaagcacaaattaaagttttatggtttagcatgggcacaatttgtagtaattgtggatactataattaccgaat-tttaaatttgtagTAATCTAGCTAGGATAGAGAGGAGTGCACAAAAACATGCAAAATCTGGCACCGATAATGTTGGGTGGTATGACAAGTGGCAAGGAAATCATTCACTGTCC
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------------------------------------------------------------------gtctttatatttctctacttgttgtgaataggtaaaacctatg--aattcttgacacaat--ttcttgcatgtttaaatttgcagTAACATAGCAAGAATAGAAAGAAGTGCACAAAAACAAGCAAAATCAGGAACTGAAAATGCTGGATGGTATGAAAAATG----------------------
upper sequence: Vv03s0038g02700.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G42430.2 (Arabidopsis thaliana), 3'ss of exon 5
gtcttgtctttattattgtgtactgcacttaaagataacttctgatttttgcaaacacaactgtaagcacaaattaaagttttatggtttagcatgggcacaatttgtagtaattgtggatactataattaccgaatt--ttaaatttgtagTAATCTAGCTAGGATAGAGAGGAGTGCACAAAAACATGCAAAATCTGGCACCGATAATGTTGGGTGGTATGACAAGTGGCAAGGAAATCATTCACTGTCC
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--------------------------------------------gtctatgttataaca-ttccctttaccagatatagcttcgttgccaacagttttcgcgctgctagattcttacag-tcctctcattgtcaacttgatcaaattt-cagTAATCTAGCAAGGATTGAAAGGAGTGCACAAAAGCAAGCAAAATCAGGAACTGAAAATGCTGGTTGGTACGAGAAATG---------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gggcacaatttgtagtaattgtggatactataattaccgaattttaaatttgtagTAATCTAGCTAGGATAGAGAGGAGTGCACAAAAACATGCAAAATCTGGCACCGATAATGTTGGGTGGTATGACAAGTGGCAAGGAAATCATTCACTGTCC
atactataattaccga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcttgtctttattattgtgtactgcacttaaagataacttctgatttttgcaaacacaactgtaagcacaaattaaagttttatggtttagcatgggcacaatttgtagtaattgtggatactataattaccgaattttaaatttgtagTAATCTAGCTAGGATAGAGAGGAGTGCACAAAAACATGCAAAATCTGGCACCGATAATGTTGGGTGGTATGACAAGTGGCAAGGAAATCATTCACTGTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA