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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcatgtccaagaaaagcctgtttaattctataacttatccctcatggttgcttcttttgatctgactttagcttttgagtcatgttttgcttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAGCATGGATTGCGGCAACTTGAAGAAGCTGAGATTGATGCCATTGTTGCTG

Basic information

species Vitis vinifera
transcript Vv03s0038g02300.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os09g36710.1 (Oryza sativa), 3'ss of exon 2
--atcatgtccaagaaaagcctgtttaattctataacttatccctcatggtt-gcttcttttgatctgactttagcttttgagtcatgttttgcttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAGCATGGATTGCGGCAACTTGAAGAAGCTGAGATTGATGCCATTGTTGCTG
      || || |    |    | | | |    ||  |  |  |   |  || | || ||||  ||   |  |  ||   ||    ||   |   |   | |||||||||||||||| ||||| ||||| |||||||| ||||||||  |  || ||||  | || ||||| || || ||||| || || |    ||||||||
tgtctttggcctatgccactacgct-agtatggtatttggttgcatttatttagattgtttttgtcaagcaattactgacgaac--tgacataaattgcacagGTTGTTGAGAGTGGCGGAAAGAACATCGAGATTGCAGTGATGACACAGAAGGATGGTCTTCGCCAACTCGAGGAGGCTGAAATCGACGAATATGTTGCTG

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G050467_T01 (Zea mays), 3'ss of exon 2
--------atcatgtccaagaaaagcctgtttaattctataacttatccctcatggttgcttcttttg-atctgactttagcttttgagtcatgttttgcttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAGCATGGATTGCGGCAACTTGAAGAAGCTGAGATTGATGCCATTGTTGCTG
         || | |   |   ||   | |||   || ||   |     || || |   ||||   || || ||     |    ||||  ||| | |    ||   ||||||||||||||||| || || |||||||||||||| ||||||||  | ||| | ||  | |   |||| ||||| |||||||||||||    |||||| |
agcttactttctttttttaatgaactatttttggctcaattgtt-----ctgattgaaccttcaactgtatttggtggcaatgattga-ccatctataatctc---tagGTTGTTGAGAGTGGTGGCAAGAACATAGAGATTGCAGTGATGACACACGAGGACGGCCTTCATGAACTCGAAGAGGCTGAGATTGATGAGTATGTTGCCG

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G23580.1 (Glycine max), 3'ss of exon 2
-atcatgtc-caagaaaagcctgtttaattctataacttatccctcatggttgcttcttttgatctgactttagcttttgagtcatgttttgcttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAGCATGGATTGCGGCAACTTGAAGAAGCTGAGATTGATGCCATTGTTGCTG
  || |||  ||  |  |   | |||   | |   | |      | |||  |          || ||  |       || | |  ||  ||  || || ||||||||||||||||| || || ||||||||  |||| |||||||| || ||||| ||  |||| ||||| || ||||| || ||||||||||| |||||||
attcctgttgcataattacagtatttctgtttgctaatagcttgttatgcgtctcaacaggaatatgtttaatatacttcacttttgactt--tttaattagGTTGTTGAGAGTGGAGGGAAGAACATAGAAGTTGCGGTGATGACTAAGGAGCAGGGTCTGCGTCAACTGGAGGAAGCCGAAATTGATGCCATCGTTGCTG

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G05190.1 (Glycine max), 3'ss of exon 2
--------atcatgtccaagaaaagcctgtt-taattctataacttatccctcatggttgcttcttttgatctgactttagcttttgagtcatgttttgcttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAGCATGGATTGCGGCAACTTGAAGAAGCTGAGATTGATGCCATTGTTGCTG
         |  |||     || ||| |||| |   | |  |||          || |   || | ||  | |||||||   ||   | |||| | |      || |||||||| ||||| || || || ||||||||  |||| |||||||| || ||||||||  |||  ||||| || |||||||| ||||||||||| |||||||
ttgcagtatttctgtttgctaatagcatgttatgtatttgcaacaggatttgtttgatatattttatt--tttgacttttatttgcca-tcatatgt------aattagGTTGTGGAGAGCGGAGGCAAGAACATAGAAGTTGCTGTGATGACTAAGGAGCATGGTCTGCATCAACTGGAGGAAGCTGAAATTGATGCCATCGTTGCTG

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G51260.1 (Arabidopsis thaliana), 3'ss of exon 2
----atcatgtccaagaaaagcctgtttaattctataacttatccctcatggttgcttcttttgatctgactttagcttttgagtcatgttttgcttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAGCATGG---ATTGCGGCAACTTGAAGAAGCTGAGATTGATGCCATTGTTGCTG
    ||   ||   |  | |   ||||  ||    | ||||| |   |      |      | || ||   |  ||    |||   | | ||||| |     |||||||||||||||||||||| ||||| ||| |||| || |||||   |||| | ||     ||  |||||| |||||||  || ||||||  |||||| |   
actaattgagttggattataa--tgttagatgagcttacttagcaaacgcacaagtagtggtggaacttg-taaagaagctgaaa-aggatttgcattttgcagGTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGGAAGGTGTTCTGAAGCAACTAGAAGAAGAAGAAATTGATATCATTGTGG---

upper sequence: Vv03s0038g02300.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G51260.2 (Arabidopsis thaliana), 3'ss of exon 2
----atcatgtccaagaaaagcctgtttaattctataacttatccctcatggttgcttcttttgatctgactttagcttttgagtcatgttttgcttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAGCATGGATTGCGGCAACTTGAAGAAGCTGAGATTGATGCCATTGTTGCTG
    ||   ||   |  | |   ||||  ||    | ||||| |   |      |      | || ||   |  ||    |||   | | ||||| |     |||||||||||||||||||||| ||||| ||| |||| || |||||   |||| | |                                             
actaattgagttggattataa--tgttagatgagcttacttagcaaacgcacaagtagtggtggaacttg-taaagaagctgaaa-aggatttgcattttgcagGTTGTTGAGAGTGGGGGAAAGAACATTGAGGTTGCTGTAATGACACGAGAGGAAG---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77579793|gb|DV218771.1|DV218771
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACG
EST: gi|56688691|gb|CX126594.1|CX126594
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|77582230|gb|DV220077.1|DV220077
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGA
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGA
EST: gi|110720566|gb|EE096599.1|EE096599
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110429107|gb|EC995595.1|EC995595
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110397399|gb|EC963134.1|EC963134
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110709999|gb|EE085949.1|EE085949
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|351027500|gb|FQ446663.1|FQ446663
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|34320380|gb|CF373134.1|CF373134
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|56688516|gb|CX126419.1|CX126419
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|56688300|gb|CX126203.1|CX126203
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGATATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|56688390|gb|CX126293.1|CX126293
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGT-GGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110364653|gb|EC928064.1|EC928064
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110719651|gb|EE094964.1|EE094964
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|349824423|gb|FQ417810.1|FQ417810
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|30325035|gb|CD008297.1|CD008297
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|56688733|gb|CX126636.1|CX126636
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|56688310|gb|CX126213.1|CX126213
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110374377|gb|EC939090.1|EC939090
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|83275448|gb|DV939456.1|DV939456
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110373329|gb|EC937554.1|EC937554
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110689512|gb|EE065799.1|EE065799
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|71881184|gb|DT030239.1|DT030239
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGG
EST: gi|110404444|gb|EC969512.1|EC969512
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110412560|gb|EC978313.1|EC978313
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110720875|gb|EE097181.1|EE097181
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAA-CATAGAGATTGCCGTGATGACGAA
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAA
EST: gi|37188686|gb|CF608035.1|CF608035
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110694460|gb|EE071586.1|EE071586
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110410051|gb|EC975727.1|EC975727
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110685943|gb|EE063115.1|EE063115
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|30323743|gb|CD007005.1|CD007005
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAANAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|349828363|gb|FQ416316.1|FQ416316
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110405293|gb|EC970833.1|EC970833
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110400056|gb|EC966598.1|EC966598
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110687383|gb|EE064746.1|EE064746
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         ATTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|351055392|gb|FQ441990.1|FQ441990
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|351016010|gb|FQ431965.1|FQ431965
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGTAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|71887768|gb|DT036823.1|DT036823
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|56688562|gb|CX126465.1|CX126465
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|56688102|gb|CX126005.1|CX126005
EST:     ACACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|351056153|gb|FQ453615.1|FQ453615
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|349828649|gb|FQ418384.1|FQ418384
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|352786801|gb|FQ481176.1|FQ481176
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|71868761|gb|DT017816.1|DT017816
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|351033091|gb|FQ446444.1|FQ446444
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|34318963|gb|CF371717.1|CF371717
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110685316|gb|EE063599.1|EE063599
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110725329|gb|EE101706.1|EE101706
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|351020256|gb|FQ445863.1|FQ445863
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGG-AAAAAACATAGAGATTGCCGTGATGACAAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|71885203|gb|DT034258.1|DT034258
EST:     CTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: CTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110374277|gb|EC938955.1|EC938955
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|110689039|gb|EE064913.1|EE064913
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|349833170|gb|FQ416548.1|FQ416548
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|34320488|gb|CF373242.1|CF373242
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
EST: gi|71875885|gb|DT024940.1|DT024940
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGG
EST: gi|349825959|gb|FQ415764.1|FQ415764
EST:     AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAA                         GTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG
genomic: AAACTTCTGGACAAGAAACTGTGAAATTAGCAATTCGGGCTTTGCTTGAAgtaagttatt ... cttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttgcttcttttgatctgactttagcttttgagtcatgttttgcttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAGCATGGATTGCGGCAACTTGAAGAAGCTGAGATTGATGCCATTGTTGCTG
               atctgac  putative branch site (score: 3)
                                        ttttgcttc  putative PPT
                                              ttcaaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atcatgtccaagaaaagcctgtttaattctataacttatccctcatggttgcttcttttgatctgactttagcttttgagtcatgttttgcttcaaatagGTTGTTGAGAGTGGGGGAAAAAACATAGAGATTGCCGTGATGACGAAAGAGCATGGATTGCGGCAACTTGAAGAAGCTGAGATTGATGCCATTGTTGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
-tcatgtc
- - - - -aagaaaa
- - - - - - - - -cctgttt
- - - - - - - - - - - - - - - - - - - tccctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgtt