1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgggatgtcacccaattcattcatcatttctttgttttgggatttcttctggatacagagcttgaagcttttctaatttatttgcagTTCAACACCAAGTATTACTATGTGGTCGGGATTGGACACACTCCACGCAAGTTTTGGTTTGTAACTCCTCCTAAAGTTGGCCCAGATGTTCCATACACTT
species | Vitis vinifera |
transcript | Vv03s0038g00230.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAATTACACTTCTGGTTACATTCATCATTGCACTATCAAGAATTTGGAG TTCAACACCAAGTTATTACTATGTGGTCGGGATTGGACACACTCCACGCAAEST: gi|161719236|gb|FC069375.1|FC069375
genomic: ACAATTACACTTCTGGTTACATTCATCATTGCACTATCAAGAATTTGGAGgtgggatgtc ... ttatttgcagTTCAACACCAAGT-ATTACTATGTGGTCGGGATTGGACACACTCCACGCAA
EST: ACAATTACACTTCTGGTTACATTCATCATTGCACTATCAAGAATTTGGAG TTCAACACCAAGTATTACTATGTGGTCGGGATTGGACACACTCCACGCAAGEST: gi|71857047|gb|DT006102.1|DT006102
genomic: ACAATTACACTTCTGGTTACATTCATCATTGCACTATCAAGAATTTGGAGgtgggatgtc ... ttatttgcagTTCAACACCAAGTATTACTATGTGGTCGGGATTGGACACACTCCACGCAAG
EST: ACAATTACACTTCTGGTTACATTCATCATTGCACTATCAAGAATTTGGAG TTCAACACCAAGTATTACTATGTGGTCGGGATTGGACACACTCCACGCAAG
genomic: ACAATTACACTTCTGGTTACATTCATCATTGCACTATCAAGAATTTGGAGgtgggatgtc ... ttatttgcagTTCAACACCAAGTATTACTATGTGGTCGGGATTGGACACACTCCACGCAAG
tgttttgggatttcttctggatacagagcttgaagcttttctaatttatttgcagTTCAACACCAAGTATTACTATGTGGTCGGGATTGGACACACTCCACGCAAGTTTTGGTTTGTAACTCCTCCTAAAGTTGGCCCAGATGTTCCATACACTT
ttctaat putative branch site (score: 2)
tttattt CT-rich tract
ttttctaatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggatgtcacccaattcattcatcatttctttgttttgggatttcttctggatacagagcttgaagcttttctaatttatttgcagTTCAACACCAAGTATTACTATGTGGTCGGGATTGGACACACTCCACGCAAGTTTTGGTTTGTAACTCCTCCTAAAGTTGGCCCAGATGTTCCATACACTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG