Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggtatagattctgttggttttttatttctccttatttggttcattctatatttttctgttcaactaaagccctggtttccacacagagGGGTGCATCAAACAACAAGTTTCTCAACTATTTAAACAAACACATAATACCTATTTTTGATAAGGTAATACTTTGA

Basic information

species Vitis vinifera
transcript Vv03s0017g01080.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0017g01080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G24090.2 (Glycine max), 3'ss of exon 8
gtggtatagattctgttggttttttatttctccttatttggttcattctatatttttctgttcaactaaagccctggtttc--cacacagagGGGTGCATCAAACAACAAGTTTCTCAACTATTTAAACAAACACATAATACCTATTTTTGATAAGGTAATACTTTGA
   |||  || | | |    | ||||| | | || || | |||   | |  | |||| | ||||||  || |  |  ||||  |   |||||||||||||||| |||||| |||||||||||| |||||||| | ||||||||| |||||||  ||            
---gtaaggactgtttatactgtttatcttttctcatattgttttctgtcaagttttttcttcaacagaatcatttttttctccttgcagAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATACCTGTTTTTGACCAG------------

upper sequence: Vv03s0017g01080.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G32480.1 (Glycine max), 3'ss of exon 9
gtg-gtatagattctgttggttttttatttctccttatttggttcattctatatttttctgttcaactaaagc-cctggtttccacacagagGGGTGCATCAAACAACAAGTTTCTCAACTATTTAAACAAACACATAATACCTATTTTTGATAAGGTAATACTTTGA
||  | |    || |  || |    | ||| || |    | |||   | |  | ||||   ||||||  || |   |  |||||   |||||||||||||||| |||||| |||||||||||| |||||||| | |||||| || |||||||  ||            
gtaaggactttttatactgttcaagtgtttatcttctcgttgttttctgtcaagtttttccttcaacagaatcattttttttccttgcagAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATATCTGTTTTTGACCAG------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttggttcattctatatttttctgttcaactaaagccctggtttccacacagagGGGTGCATCAAACAACAAGTTTCTCAACTATTTAAACAAACACATAATACCTATTTTTGATAAGGTAATACTTTGA
                            aactaaa  putative branch site (score: 2)
                                          tttccac  putative PPT
      ttcattctatattttt  TA-rich tract