Sequence
atgc intronic sequence ATGC exonic sequence...atagttgctgtcttggcaacatattatccaaccaaatgtgccactagttcattttctgtgcacatctatgctgaaattctttttctatgtactctgatagTTCATGATGGCCAATGGTGGTTTGGTCCGTGTTCTCATCCACACTGATGTTACTAAGTACCTAAATTTCAAGGCCGTGGATGGTAGTTTTGTGTACAACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0017g00490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os03g16900.1 (Oryza sativa), 3'ss of exon 3
atagttgctgtcttggcaacatattatccaaccaaatgtgccactagttcattttctgtgcacatctatgctg-aaattctttttctatgtactctgatagTTCATGATGGCCAATGGTGGTTTGGTCCGTGTTCTCATCCACACTGATGTTACTAAGTACCTAAATTTCAAGGCCGTGGATGGTAGTTTTGTGTACAACA
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---------gtcc-gtcatcactggagcgttctctatcttccctgaattt-ttgcttacacgcaact-tgctacaaattattcgtctgc----------agTTCATGATGGCCAACGGTGCACTGGTCCGTGTACTCATCCACACGAGTGTGACAAAGTATCTGAATTTCAAGGCTGTCGACGGCAGCTTCGTGTACAACA
upper sequence: Vv03s0017g00490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G30050.1 (Glycine max), 3'ss of exon 3
atagttgctgtcttggcaacatattatccaaccaaatgtgccactagttcattttctgtgcacatctatgctgaaatt---ctttttctatgtactctgatagTTCATGATGGCCAATGGTGGTTTGGTCCGTGTTCTCATCCACACTGATGTTACTAAGTACCTAAATTTCAAGGCCGTGGATGGTAGTTTTGTGTACAACA
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ttctccatcattttgac--tctactttttgcttatata-gtttccatttcaatttttctatttacttatgacaaaaaccaacttctcatctgtttttttgtagTTTATGATGGCCAATGGAGCTTTGGTCCGTGTTCTGATTCACACAGATGTTACAAAGTATTTGAACTTCAAAGCTGTAGATGGAAGCTTTGTGTATAACA
upper sequence: Vv03s0017g00490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G07250.1 (Glycine max), 3'ss of exon 3
atagttgctgtcttggcaacatattatccaaccaaatgtgccactagttcattttctgtgcacatctatgctgaaatt---ctttttctatgtactctgatagTTCATGATGGCCAATGGTGGTTTGGTCCGTGTTCTCATCCACACTGATGTTACTAAGTACCTAAATTTCAAGGCCGTGGATGGTAGTTTTGTGTACAACA
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---ctcggattctccatcatatggactctactttttacttatacagtttccatttttctattaatttatgacaaaaaccaacttttcatctatttttttgtagTTTATGATGGCCAATGGAGCTTTGGTCCGTGTTCTGATTCACACAAATGTTACAAAGTATTTGAACTTTAAAGCTGTAGATGGAAGCTTTGTGTATAACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agttcattttctgtgcacatctatgctgaaattctttttctatgtactctgatagTTCATGATGGCCAATGGTGGTTTGGTCCGTGTTCTCATCCACACTGATGTTACTAAGTACCTAAATTTCAAGGCCGTGGATGGTAGTTTTGTGTACAACA
aaattctttttctat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atagttgctgtcttggcaacatattatccaaccaaatgtgccactagttcattttctgtgcacatctatgctgaaattctttttctatgtactctgatagTTCATGATGGCCAATGGTGGTTTGGTCCGTGTTCTCATCCACACTGATGTTACTAAGTACCTAAATTTCAAGGCCGTGGATGGTAGTTTTGTGTACAACA
- - - - tgtcttg
- - - - - - - - - - - - - -ccaacca
- - - - - - - - - - - - - - - - - - - -gccacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctatgct