1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caatttataggaaaggtagacagattttcatttgcccatgttggcatgaaccatcaacttaacatatttcatctttgatctcaaattaatgtattttcagGACCTGAAGTTGATAGATTGGCTTCAATGGCTAGGAAATACAAAGTCTACATAGTGACGGGCGTTATTGAGAGAGATGGATACACATTGTATTGCACTGT
species | Vitis vinifera |
transcript | Vv02s0109g00430.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGG GACCTGAAGTTGATAGACTGGCTTCAATGGCTAGGAAATATAAAGTCTACAEST: gi|161716591|gb|FC067462.1|FC067462
genomic: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGGgtcagttacc ... gtattttcagGACCTGAAGTTGATAGATTGGCTTCAATGGCTAGGAAATACAAAGTCTACA
EST: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGG GACCTGAAGTTGATAGATTGGCTTCAATGGCTAGGAAATATAAAGTCTACAEST: gi|161720887|gb|FC070990.1|FC070990
genomic: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGGgtcagttacc ... gtattttcagGACCTGAAGTTGATAGATTGGCTTCAATGGCTAGGAAATACAAAGTCTACA
EST: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGG GACCTGAATTTGATAGATTGGCTTCAATGGCTAGGAAATATAAAGTCTACAEST: gi|71858679|gb|DT007734.1|DT007734
genomic: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGGgtcagttacc ... gtattttcagGACCTGAAGTTGATAGATTGGCTTCAATGGCTAGGAAATACAAAGTCTACA
EST: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGG GACCTGAAGTTGATAGACTGGCTTCAATGGCTAGGAAATATAAAGTCTACA
genomic: AGGGAAAGAAAGTTTCCGCAAGTACCATGCTTCTGCCATTAATGTGCCGGgtcagttacc ... gtattttcagGACCTGAAGTTGATAGATTGGCTTCAATGGCTAGGAAATACAAAGTCTACA
atgaaccatcaacttaacatatttcatctttgatctcaaattaatgtattttcagGACCTGAAGTTGATAGATTGGCTTCAATGGCTAGGAAATACAAAGTCTACATAGTGACGGGCGTTATTGAGAGAGATGGATACACATTGTATTGCACTGT
aattaat putative branch site (score: 3)
tattttc CT-rich tract
tcaaattaatgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caatttataggaaaggtagacagattttcatttgcccatgttggcatgaaccatcaacttaacatatttcatctttgatctcaaattaatgtattttcagGACCTGAAGTTGATAGATTGGCTTCAATGGCTAGGAAATACAAAGTCTACATAGTGACGGGCGTTATTGAGAGAGATGGATACACATTGTATTGCACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - aggaaag
- - - - - - - - -agacaga
- - - - - - - - - - - - - - - - - cccatgt
- - - - - - - - - - - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - ccatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaa