Sequence
atgc intronic sequence ATGC exonic sequencegtaaggcttggcaactctcaggccttttctggttgcacttgttatttacataatatatccatatatttagagtggtagatttacaccattttgttgcttaaatcttgtcattcaaatagGATATTTGGGAACCAGCTTCTGTTTCTTATTGGACTTAGCTACACAAATCCAACTTATGCAGCTGCCACACAACCTGCAATTCCAGTCTTTACATTTATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0087g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G09520.1 (Glycine max), 3'ss of exon 2
gtaaggcttggcaactctcaggccttttctggt-tgcacttgttatttacataatatatccatatatttagagtggtagatttacaccattttgttgc-ttaaatcttgtcattcaaatagGATATTTGGGAACCAGCTTCTGTTTCTTATTGGACTTAGCTACACAAATCCAACTTATGCAGCTGCCACACAACCTGCAATTCCAGTCTTTACATTTATA
| |||| || | | | || ||||| || | |||| | | || |||| | ||| | | || || | ||| ||||| | ||||||||||| ||||||||| ||||||||||||| | ||||| || |||||||||||||| ||||||| ||| || | |||||||||||||| ||| |
----------------gtgaggctcttgatactacttatttcctatttccactacatatgaa---agatacagtgttttattgatgc-atgaggtaacgttacttcttgattcatgatcagGATATTTGGCAACCAGCTTTTGTTTCTTATTGGTTTAAGCTATACTAATCCAACTTATGCGGCTGCCATACAGCCATCCATTCCAGTCTTTACCTTTCTG
upper sequence: Vv02s0087g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G09540.1 (Glycine max), 3'ss of exon 2
gtaaggcttggcaactctcaggccttttctggttgcacttgttatttacataatatatccatatatttagagtggtagatttacaccattttgttgcttaaatcttgtcattcaaatagGATATTTGGGAACCAGCTTCTGTTTCTTATTGGACTTAGCTACACAAATCCAACTTATGCAGCTGCCACACAACCTGCAATTCCAGTCTTTACATTTATA
||||| | | | || | ||| | || | | | ||| | || ||| | | ||| || | | | | || ||||||||||| ||||||||| ||||||||||||| | || || || |||||||||||||| ||||| ||| || || |||||||||||||||||| |
-------------------gtaagatttcttgctata---gtcacttatttcccattttcgtgattttttaatg-----catactctaattttttcttcatgattcatgatc-----agGATATTTGGCAACCAGCTTTTGTTTCTTATTGGTTTAAGTTATACTAATCCAACTTATGCTGCTGCTGTACAGCCAGCCATTCCAGTCTTTACATTTCTG
upper sequence: Vv02s0087g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G21200.1 (Glycine max), 3'ss of exon 3
gtaaggcttggcaactctcaggccttttctggttgca-cttgttatttacataatatatccat-atatttaga---gtggtagatttacaccattttgttgcttaaatcttgtcattcaaatagGATATTTGGGAACCAGCTTCTGTTTCTTATTGGACTTAGCTACACAAATCCAACTTATGCAGCTGCCACACAACCTGCAATTCCAGTCTTTACATTTATA
|||||| | | | | || || ||||| | || ||| | ||| | | || | | || | || || |||| ||||||||||| ||||| ||| ||||||||||||| | ||||| || |||||||||||||| ||||| | || || || | ||| |||||||| ||| |
-------------------------gttctggatatagcctcctacatattccctatatttgttatgtttgaaccagtgtttggttgatgcaatggtattttttgcttctttattcatgctcagGATATTTGGCAACCACCTTTTGTTTCTTATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCGGTCTTTACTTTTCTG
upper sequence: Vv02s0087g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G08380.1 (Glycine max), 3'ss of exon 2
gtaaggct-tggcaactctcaggccttttctggttgcacttgttatttacataatatatccatatatttagagtggtagatttacaccattttgttgcttaaatcttgtcattcaaatagGATATTTGGGAACCAGCTTCTGTTTCTTATTGGACTTAGCTACACAAATCCAACTTATGCAGCTGCCACACAACCTGCAATTCCAGTCTTTACATTTATA
|| ||| | ||| | ||| ||| || | ||||||| | | ||| | ||| | || | ||| | ||||| | ||| | || || ||||||||||| ||||| ||| ||||||| ||||| | ||||| || |||||||||||||| ||||| | || || || | |||||||||||| ||| |
gtgaggttctggatatagtcacatatttccta----tatttgttatgtttgaatcata-----gtgtttc-attgatgcattggtatt-ttttgcttctttattcatgct-------cagGATATTTGGCAACCATCTTTTGTTTCTGATTGGCTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCAGTCTTTACTTTTCTG
upper sequence: Vv02s0087g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G45370.2 (Arabidopsis thaliana), 3'ss of exon 2
gtaaggcttggcaactctcaggccttttctggttgcacttgttatttacataatatatccatatatttagagtggtagatttacaccattttgttgcttaaatcttgtc---attcaaatagGATATTTGGGAACCAGCTTCTGTTTCTTATTGGACTTAGCTACACAAATCCAACTTATGCAGCTGCCACACAACCTGCAATTCCAGTCTTTACATTTATA
|| | | | ||| || ||| ||| || | | | | ||| | | | || || || |||||||||||||||||||| | || |||||||| || | ||||| |||||||||||||| ||||| | |||||| |||| || |||||||||||| |
------------------------------------gtaaagtaatcagcttgtatctctttatcttttgaatcatgctaatgaaagattctaataacaacattcaatctcaatcttgatagGATATTTGGGAACCAGTTACTATTTCTTATGGGTTTATCTTACACGAATCCAACTTATGCTGCTGCTATACAACCATCAATCCCTGTCTTTACATTTCTC
upper sequence: Vv02s0087g00880.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G19185.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaaggcttggcaactctcaggccttttctggttgcacttgttatttacataatatatccatatatttagagtggtagatttacaccattttgttgcttaaatcttgtcattcaaatagGATATTTGGGAACCAGCTTCTGTTTCTTATTGGACTTAGCTACACAAATCCAACTTATGCAGCTGCCACACAACCTGCAATTCCAGTCTTTACATTTATA
| | | | ||| || ||| | || | ||| | | | | | | | ||| | ||||| ||| ||| ||||| |||||||||||||| | | |||||||| || |||| ||||||||||| |||||||| ||||||| ||||| | || || ||||| || ||| |
--------------gtaagaaatcatctctatccagtctcaatatcttgtgttcatgtttatagaggttaaatatctcagtaaagccacctc--tgctttgttctca--attttgatagGGTATTTGGGAACCAGTTGTTATTTCTTATCGGTCTTACATACACAAATCCCACTTATGCTGCTGCCATTCAACCATCCATCCCGGTCTTCACCTTTCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttagagtggtagatttacaccattttgttgcttaaatcttgtcattcaaatagGATATTTGGGAACCAGCTTCTGTTTCTTATTGGACTTAGCTACACAAATCCAACTTATGCAGCTGCCACACAACCTGCAATTCCAGTCTTTACATTTATA
ttaaatctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaggcttggcaactctcaggccttttctggttgcacttgttatttacataatatatccatatatttagagtggtagatttacaccattttgttgcttaaatcttgtcattcaaatagGATATTTGGGAACCAGCTTCTGTTTCTTATTGGACTTAGCTACACAAATCCAACTTATGCAGCTGCCACACAACCTGCAATTCCAGTCTTTACATTTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC