Sequence
atgc intronic sequence ATGC exonic sequence...tatcccacaacttgcatctcccacaaatctttatgtgtgcttgtgatatgcatctctttgagatctagaccatttacctattatactttctactatgcagATCAGGTTGTTGAAAATTCTGGCATTGCTGGGCAGTGGTGATAGACAAGCAAGCGAAAACATGTATACTGTTGTGGGTGACATATTCAGGAAGTGTGATT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G031352_T02 (Zea mays), 3'ss of exon 2
-----------------------------------tatcccac-aacttgcatctcccacaaat---ctttatgtgtgcttgtgat---atgcatctctttgagatctagaccatttacctattatact--ttctactat--gcagATCAGGTTGTTGAAAATTCTGGCATTGCTGGGCAGTGGTGATAGACAAGCAAGCGAAAACATGTATACTGTTGTGGGTGACATATTCAGGAAGTGTGATT-----------------------------------
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gtacttgagttaaattaaacattatttatttgttaggtgctgctaggttgctattgcgagttatgcttcttttatgggtttaagctttcagttgtcaccatgctatccgg-ctatctgccttagattttgtttctgtcatcggcagataaaactattgaagatacttgctgtgcttggcagTGGTGATAAACAAGCAAGTGGACATATGTACACTGTATTGGGCGACATATTCAAGAAGGGTGACACTGCGAGCAACATTGGCAATGCTATACTGTATGAA
upper sequence: Vv02s0087g00690.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G031352_T01 (Zea mays), 3'ss of exon 1
-----------------------------------tatcccac-aacttgcatctcccacaaat---ctttatgtgtgcttgtgatat---gcatctctttgagatctagaccatttacct--attatactttctactat--gcagATCAGGTTGTTGAAAATTCTGGCATTGCTGGGCAGTGGTGATAGACAAGCAAGCGAAAACATGTATACTGTTGTGGGTGACATATTCAGGAAGTGTGATT
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gtacttgagttaaattaaacattatttatttgttaggtgctgctaggttgctattgcgagttatgcttcttttatgggtttaagctttcagttgtcaccatgctatccgg-ctatctgccttagattttgtttctgtcatcggcagATAAAACTATTGAAGATACTTGCTGTGCTTGGCAGTGGTGATAAACAAGCAAGTGGACATATGTACACTGTATTGGGCGACATATTCAAGAAGGGTGACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatgcatctctttgagatctagaccatttacctattatactttctactatgcagATCAGGTTGTTGAAAATTCTGGCATTGCTGGGCAGTGGTGATAGACAAGCAAGCGAAAACATGTATACTGTTGTGGGTGACATATTCAGGAAGTGTGATT
ctttctact CT-rich tract
atttacctattata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tatcccacaacttgcatctcccacaaatctttatgtgtgcttgtgatatgcatctctttgagatctagaccatttacctattatactttctactatgcagATCAGGTTGTTGAAAATTCTGGCATTGCTGGGCAGTGGTGATAGACAAGCAAGCGAAAACATGTATACTGTTGTGGGTGACATATTCAGGAAGTGTGATT
- -cccacaa
- - - - - cttgcat
- - - - - - - - - - ccacaaa
- - - - - - - - - - - - - - - - - - - gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catttac