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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttattattcttttgactgtacttctagtcctgcttgtggactgttgtcattttcccctctcctatttagtgattttacacttaaattttccatttatcatgcagCTCACAGTGCTGTTGTGTTAAAGGCTGAGAGCGCAGCGGATAAGGCTGAGTGGTTAAACAAATTGAGAAATGTTATTCAGCCTTCAGGTCAAGTGAAGGG

Basic information

species Vitis vinifera
transcript Vv02s0087g00010.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0087g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G157462_T01 (Zea mays), 3'ss of exon 17
gtacgttattattcttttgactgtacttctagtcctgcttgtggactgttgtcattttcccctctcctatttagtgattttacacttaaattttccatttatcatgcagCTCACAGTGCTGTTGTGTTAAAGGCTGAGAGCGCAGCGGATAAGGCTGAGTGGTTAAACAAATTGAGAAATGTTATTCAGCCTTCAGGTCAAGTGAAGGG
    |||  ||| |  |||| |         || | |||| ||||  ||||| |||| |   | |    ||  ||  ||||| | ||   ||| |  |  ||  |||||||||||||||||||||||||||||||||||||   || || |||| ||||||| |||| ||  | | |  ||||||||||     |||            
----gttgatatacccttgaatc--------gtacagcttatgga--gttgt-atttgc---tttgtgtttctgtttttttataattc--tttgctttaaattttgcagCTCACAGTGCTGTTGTGTTAAAGGCTGAGAGCATGGCCGACAAGGTTGAGTGGGTAAATAAGATCAAAGCTGTTATTCAGAGCAAAGGGGGTTCTTTCAA

upper sequence: Vv02s0087g00010.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM5G811223_T01 (Zea mays), 3'ss of exon 5
gtacgttattattcttttgactgtacttctagtcctgcttgtggactgttgtcattttcccctctcctatttagtgattttacacttaaattttccatttatcatgcagCTCACAGTGCTGTTGTGTTAAAGGCTGAGAGCGCAGCGGATAAGGCTGAGTGGTTAAACAAATTGAGAAATGTTATTCAGCCTTCAGGTCAAGTGAAGGG
    ||| |    | |   |  ||||  |   |   | |     | |    ||||  | |  | |  | ||   | ||| |   ||| ||| ||          ||||||||||||||||||| |||||||||||||||||    | || |||| ||||||| | || ||  | | |  ||||||||||     |||            
----gttgtataccctcaaatcgtacagcctatggagtt---atatttgcttcatggttctgtttttttttatataattctctgctttaatatt----------tgcagCTCACAGTGCTGTTCTGTTAAAGGCTGAGAGCATGCCTGACAAGGTTGAGTGGGTGAATAAGATCAAAGCTGTTATTCAGAGCAAAGGGGGTTCTTTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcccctctcctatttagtgattttacacttaaattttccatttatcatgcagCTCACAGTGCTGTTGTGTTAAAGGCTGAGAGCGCAGCGGATAAGGCTGAGTGGTTAAACAAATTGAGAAATGTTATTCAGCCTTCAGGTCAAGTGAAGGG
                                    ttttccattt  CT-rich tract
             tatttagtgattttac  TA-rich tract