1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaccttttattcacacgatcccacgctgctttttctgaatgggtcatattttttctagcgttgccattttcccccatttaaatataagaattccattcttaatgacagAGAAAGCACATGTGCCATGCCATGCTGCTGGAGACGGTGGCAGCGGTGCCAGGCATGGTCGGGGGAATGCTGTTGCACTGCCAGTCCCCGAGGCGGTTCG
species | Vitis vinifera |
transcript | Vv02s0033g01380.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTATTGGACTGTCCAAGCTCTCAAGATCCCTACTCACATGTTCTTTCAG AGAAAGCACATGTGCCATGCCATGCTGCTGGAGACGGTGGCAGCGGTGCCAEST: gi|22011811|gb|BQ796845.1|BQ796845
genomic: CCTATTGGACTGTCCAAGCTCTCAAGATCCCTACTCACATGTTCTTTCAGgtacctttta ... ttaatgacagAGAAAGCACATGTGCCATGCCATGCTGCTGGAGACGGTGGCAGCGGTGCCA
EST: CCTATTGGACTGTCCAAGCTCTCAAGGTCCCTACTCACATGTTCTTTCAG AGAAAGCACATGTGCCATGCCATGCTGCTAGAGACAGTGGCAGCGGTGCCA
genomic: CCTATTGGACTGTCCAAGCTCTCAAGATCCCTACTCACATGTTCTTTCAGgtacctttta ... ttaatgacagAGAAAGCACATGTGCCATGCCATGCTGCTGGAGACGGTGGCAGCGGTGCCA
tctagcgttgccattttcccccatttaaatataagaattccattcttaatgacagAGAAAGCACATGTGCCATGCCATGCTGCTGGAGACGGTGGCAGCGGTGCCAGGCATGGTCGGGGGAATGCTGTTGCACTGCCAGTCCCCGAGGCGGTTCG
tcttaat putative branch site (score: 3)
ttccattctt CT-rich tract
atttaaatataagaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccttttattcacacgatcccacgctgctttttctgaatgggtcatattttttctagcgttgccattttcccccatttaaatataagaattccattcttaatgacagAGAAAGCACATGTGCCATGCCATGCTGCTGGAGACGGTGGCAGCGGTGCCAGGCATGGTCGGGGGAATGCTGTTGCACTGCCAGTCCCCGAGGCGGTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT