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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataggtttatggaatgatcaatcatcttatgttagcttctattctatagtattggcacgtggctgtatgaatgttcttgtattgcagGCAGATTGTGATGTGATTAAAATAGATATTCAGTGTATGGTGCAAGGAGATGTTGTGCTAGAGTGTGTCCATTTAGATGTGGATTCAGAAAGGGAGGTTA

Basic information

species Vitis vinifera
transcript Vv02s0033g01360.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G14770.1 (Glycine max), 3'ss of exon 2
-------------gtataggtttatggaatgatcaatcatcttatgttagcttctattctatagtattggcacgtggctgtatgaat-gttcttgtattgcagGCAGATTGTGATGTGATTAAAATAGATATTCAGTGTATGGTGCAAGGAGATGTTGTGCTAGAGTGTGTCCATTTAGATGTGGATTCAGAAAGGGAGGTTA
              | |   ||  ||   || |   | || || | |  |  |||   ||||    |||   |  |  || |||| | ||  || |||  |||||||| |||||||||||||| || |||||||| ||  | |||||||| ||||| ||  | |||||||||||||| ||| |||||   || ||||| || |
ctgtatctaacttttgtcctttgttgtgttggtttgtaattttgtatgtgtgtctgcactatt---ttgatgctggaatgaatgagttgtgtttttatctcagGCAGACTGTGATGTGATTAAGATTGATATTCAATGCTTAGTGCAAGGGGATGTGGTTTTGGAGTGTGTCCATTTGGATTTGGATCTGGAGAGGGAAGTGA

upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA09G34830.1 (Glycine max), 3'ss of exon 2
------------gtataggtttatggaatgatcaatcatcttatgttagcttctattctatagtattggcacgtggctgtatgaat-gttcttgtattgcagGCAGATTGTGATGTGATTAAAATAGATATTCAGTGTATGGTGCAAGGAGATGTTGTGCTAGAGTGTGTCCATTTAGATGTGGATTCAGAAAGGGAGGTTA
             | |   ||  ||   || |   | || || |||  ||     | | ||| | |||      |  || |||| | ||  || |||  |||||||| |||||||||||||| || |||||||| ||  | ||| |||| ||||| ||| | |||||||||||||| ||| ||||| | || ||||| || |
tgtatctaagttttgtcctttgttgtgttggtttctaattttgtgtgtgcacgcgtgc-ata-tgttgaggttggaatgaatgagttgtgtttttatctcagGCAGACTGTGATGTGATTAAGATTGATATTCAATGCCTAGTGAAAGGGGATGTGGTGTTGGAGTGTGTCCATTTGGATTTGGATCCGGAGAGGGAAGTGA

upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G31810.1 (Arabidopsis thaliana), 3'ss of exon 3
gtataggttt-atggaatgatcaatcatct-tatgttagcttctattctatagtattggcacgtggctgtatgaatgt-tcttgtattgc---agGCAGATTGTGATGTGATTAAAATAGATATTCAGTGTATGGTGCAAGGAGATGTTGTGCTAGAGTGTGTCCATTTAGATGTGGATTCAGAAAGGGAGGTTA
   | ||||| ||   ||| |  || || | | ||  | |||||||    ||  | |     |  |     | ||| | |    ||| ||   ||||||| ||||| || || ||||| ||||| |||||   ||| |||||||||||||| || |||||||| ||| | ||| ||||| ||||| | |||||||
--gtgggtttgatcttatgttttatgatttgtttgacaccttctataaagtatcactcttctg-agtaacgtaaatctgtaccatatggctccagGCAGAATGTGACGTAATCAAAATTGATATCCAGTGCTGGGTTCAAGGAGATGTTGTACTGGAGTGTGTGCATATGGATTTGGATCCAGAACGAGAGGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcttctattctatagtattggcacgtggctgtatgaatgttcttgtattgcagGCAGATTGTGATGTGATTAAAATAGATATTCAGTGTATGGTGCAAGGAGATGTTGTGCTAGAGTGTGTCCATTTAGATGTGGATTCAGAAAGGGAGGTTA
                                       tgttctt  CT-rich tract
       tattctatagtatt  TA-rich tract