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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaatcacttcatcgcttatttcaagtttctatagaccattccattctccaggatttgctttggtgtcaaattgcttacattgtgtgtgtatctctattgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGTCCCCCAGTATTTGAAAGGAAGGAATGCTTGATCCCACCACCAGATGGAT

Basic information

species Vitis vinifera
transcript Vv02s0033g01120.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110705273|gb|EE081966.1|EE081966
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|30299339|gb|CB976133.1|CB976133
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCGTGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|37183944|gb|CF603298.1|CF603298
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|110712136|gb|EE089409.1|EE089409
EST:     GGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGC
genomic: GGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|110720926|gb|EE097340.1|EE097340
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|110724515|gb|EE100409.1|EE100409
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|110724258|gb|EE099928.1|EE099928
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|71855537|gb|DT004592.1|DT004592
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|110705287|gb|EE081996.1|EE081996
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|37183817|gb|CF603171.1|CF603171
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|110685058|gb|EE063045.1|EE063045
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
EST: gi|110723381|gb|EE100627.1|EE100627
EST:     CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGG                         AAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT
genomic: CAGAATGCAGTAGGGAATATCAAGACTACACTCCATGTACAGATCCAAGGgtatcaatca ... attgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatttgctttggtgtcaaattgcttacattgtgtgtgtatctctattgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGTCCCCCAGTATTTGAAAGGAAGGAATGCTTGATCCCACCACCAGATGGAT
                     tgcttac  putative branch site (score: 2)
                                        tctctatt  putative PPT
                                            tattgtta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatcaatcacttcatcgcttatttcaagtttctatagaccattccattctccaggatttgctttggtgtcaaattgcttacattgtgtgtgtatctctattgttacagAAATGGAAAAAATATGGTCTTCATCGTCTTACTTTTATGGAACGCCACTGTCCCCCAGTATTTGAAAGGAAGGAATGCTTGATCCCACCACCAGATGGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA