Sequence
atgc intronic sequence ATGC exonic sequence...caagtgtgaagcctagaagtttattctggcatttgttcttagtataacagatgtgatgcttagtgtcattgtggagcacttgatcattttttttatgcagGAATGTCACTCTATTGCACACTGCATGGCAGGTGGTTGTGCAAGCATTGCTACTTCTTTCATTTTTACTCCCAGTGAGCATATAAAGCAACAGATGCAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G37810.1 (Glycine max), 3'ss of exon 3
caagtgtgaagcctagaagtttat--tctggcatttgttcttagtataacagatgtgatgcttagtgtcattgtggagcacttgatcattttttttatgcagGAATGTCACTCTATTGCACACTGCATGGCAGGTGGTTGTGCAAGCATTGCTACTTCTTTCATTTTTACTCCCAGTGAGCATATAAAGCAACAGATGCAAA
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-aaacatcgctgtaaatattatagtgtttgacatcagtaactcttactattattttagtgtttattggcataaatgaggtttcaatcatcttttc-gtgcagGAGTATTATTCTTTTGCCCATTGCATGGGAGGTGGTTGTGCAAGCATTGCCACCTCTTTCATTTTTACTCCCAGTGAGCGAATAAAGCAGCAGATGCAAG
upper sequence: Vv02s0025g03490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G01790.1 (Glycine max), 3'ss of exon 8
caagtgtgaagcctagaagtttat----tctggcatttgttcttagtataacagatgtgatgcttagtgtcattgtggagcacttgatcattttttttatgcagGAATGTCACTCTATTGCACACTGCATGGCAGGTGGTTGTGCAAGCATTGCTACTTCTTTCATTTTTACTCCCAGTGAGCATATAAAGCAACAGATGCAAA
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-aaacatc--gctgtaaatattatggtgtttgacatcagtgactcttactattattttagtgtttattggcataaatgaggtttcaatcatcttttc-gtgcagGAGTATTGTTCTTTTGCCCATTGCGTGGGAGGTGGTTGTGCAAGCATTGCCACCTCTTTCATTTTTACTCCCAGTGAGCGAATAAAGCAGCAGATGCAAG
upper sequence: Vv02s0025g03490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT4G11440.1 (Arabidopsis thaliana), 3'ss of exon 3
caagtgtgaagcctagaagtttattctggcatttgttcttagtataacagatgtgatgcttagtgtcattgtggagcacttgatcatttttttta--tgcagGAATGTCACTCTATTGCACACTGCATGGCAGGTGGTTGTGCAAGCATTGCTACTTCTTTCATTTTTACTCCCAGTGAGCATATAAAGCAACAGATGCAAA
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----------gtctc----ttttttctcgcatgtctccattcttctgatggcctgtttcgcagaataagtaaagtcatattactaaattcttgaaatttcagGAATATTGCTCCCTAGCCCACTGCTTAGCTGGTGGTTCTGCAAGCATTGCAACTTCTTTTATCTTCACGCCTAGTGAGCGCATAAAACAGCAGATGCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aacagatgtgatgcttagtgtcattgtggagcacttgatcattttttttatgcagGAATGTCACTCTATTGCACACTGCATGGCAGGTGGTTGTGCAAGCATTGCTACTTCTTTCATTTTTACTCCCAGTGAGCATATAAAGCAACAGATGCAAA
tcatttttttt CT-rich tract
ttgatcatttttttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caagtgtgaagcctagaagtttattctggcatttgttcttagtataacagatgtgatgcttagtgtcattgtggagcacttgatcattttttttatgcagGAATGTCACTCTATTGCACACTGCATGGCAGGTGGTTGTGCAAGCATTGCTACTTCTTTCATTTTTACTCCCAGTGAGCATATAAAGCAACAGATGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - tgaagcc
- - - - - - - - - - - - - - gcatttg
- - - - - - - - - - - - - - - - - - - - - - taacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacttg