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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaatctaaaagttttgatcctactgcattcctgaaatatcaactagtatatacctaatgctcctttgagctgctaaattgtcatagtccctaattccatctcttttctgaaccagGTTTCATATTCTATCTTAATCTTCTTTTGTGGCATGTTCATCACAGTGGATGGCTTTAACAGAACAGGGATACCTAGCACTCTCTGGAACCTAACCGAGC

Basic information

species Vitis vinifera
transcript Vv02s0025g03310.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g03310.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S155_48V6.1 (Physcomitrella patens), 3'ss of exon 2
gtagaatctaaaagttttgatcctactgcattcctgaaatatcaactagtatatacctaatgctcctttgagctgctaaattgtcatagtccctaattccatctcttttctgaaccagGTTTCATATTCTATCTTAATCTTCTTTTGTGGCATGTTCATCACAGTGGATGGCTTTAACAGAACAGGGATACCTAGCACT-CTCTGGAACCTAACCGAGC
      ||| ||||      ||| || ||||  || ||   |   |    |||||  |  ||     ||||  |      ||    |  | |    |  | | |     ||    |||||||| ||||||||| |  | ||||| |  |||||||||||||| ||||| |||||||||||||| ||     | |||||   |||||     |   ||||
------tctgaaag------tcccacagcatgtct-aaccgtgttcagaaatataattggtgtga--ttgatttctcttgttcatttgctgctgtgtgacgtatgccacct---tcagGTTTCGTATTCTATCCTGGTTTTCTTCTCCGGCATGTTCATCACCGTGGAGGGCTTTAACAGAACTGGAGC-TCCAGCACGGTTCTGGTTAGCAGTGGAGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37183893|gb|CF603247.1|CF603247
EST:     TTGCTCTTGTGGTTCTCGACTTCAAGGATGCTCAGCCATGCCTACAAAAG                         GTTTCATATTCTATCTTAATCTTCTTTTGTGGCATGTTCATCACAGTGGAT
genomic: TTGCTCTTGTGGTTCTCGACTTCAAGGATGCTCAGCCATGCCTACAAAAGgtagaatcta ... tctgaaccagGTTTCATATTCTATCTTAATCTTCTTTTGTGGCATGTTCATCACAGTGGAT
EST: gi|110421288|gb|EC987584.1|EC987584
EST:     TTGCTCTTGTGGTTCTCGACTTCAAGGATGCTCAGCCATGCCTACAAAAG                         GTTTCATATTCTATCTTAATCTTCTTTTGTGGCATGTTCATCACAGTGGAT
genomic: TTGCTCTTGTGGTTCTCGACTTCAAGGATGCTCAGCCATGCCTACAAAAGgtagaatcta ... tctgaaccagGTTTCATATTCTATCTTAATCTTCTTTTGTGGCATGTTCATCACAGTGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctttgagctgctaaattgtcatagtccctaattccatctcttttctgaaccagGTTTCATATTCTATCTTAATCTTCTTTTGTGGCATGTTCATCACAGTGGATGGCTTTAACAGAACAGGGATACCTAGCACTCTCTGGAACCTAACCGAGC
                          tccctaattccatctc  CT-rich tract
             taaattgt  TA-rich tract