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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtggtgtcctgtaattgattttataatgttagaaaagtttatatatatatatatatgctatcttgggaattggggttttctttgactgatatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCATACTGGCCGGGTCTGTTTGCTAAGCTTGTAGAGAAGAAGAGTGTAGATG

Basic information

species Vitis vinifera
transcript Vv02s0025g02780.t01
intron # 2
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110371992|gb|EC936132.1|EC936132
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110371404|gb|EC935403.1|EC935403
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|351014778|gb|FQ437978.1|FQ437978
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|33406922|gb|CF212549.1|CF212549
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|352791127|gb|FQ477454.1|FQ477454
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGTCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|33410374|gb|CF216001.1|CF216001
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|30298911|gb|CB975705.1|CB975705
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110379898|gb|EC945122.1|EC945122
EST:     TGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: TGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110700098|gb|EE077750.1|EE077750
EST:     ATTGATTCTCCACGA--ATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: ATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|28966400|gb|CB345433.1|CB345433
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110363970|gb|EC927606.1|EC927606
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110395934|gb|EC961608.1|EC961608
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|30297449|gb|CB974243.1|CB974243
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110381565|gb|EC934800.1|EC934800
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110417277|gb|EC983318.1|EC983318
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|352785417|gb|FQ477631.1|FQ477631
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|37186133|gb|CF605486.1|CF605486
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110369339|gb|EC933494.1|EC933494
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110404864|gb|EC970388.1|EC970388
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCT
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110389396|gb|EC954230.1|EC954230
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110707095|gb|EE083206.1|EE083206
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|33410296|gb|CF215923.1|CF215923
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110697747|gb|EE075006.1|EE075006
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110414181|gb|EC980007.1|EC980007
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCT
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110422469|gb|EC988794.1|EC988794
EST:     ATTGATTCTGCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCT
genomic: ATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|30136402|gb|CB921740.1|CB921740
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|352794727|gb|FQ475225.1|FQ475225
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110694618|gb|EE071884.1|EE071884
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|37185687|gb|CF605040.1|CF605040
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110702829|gb|EE079140.1|EE079140
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|33406830|gb|CF212457.1|CF212457
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110417128|gb|EC983156.1|EC983156
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCT
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|34363614|gb|CF405199.1|CF405199
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110383890|gb|EC948295.1|EC948295
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|77577625|gb|DV217557.1|DV217557
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|352791094|gb|FQ477421.1|FQ477421
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|29784529|gb|CB345374.2|CB345374
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110717921|gb|EE094199.1|EE094199
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110718039|gb|EE094422.1|EE094422
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110362455|gb|EC925991.1|EC925991
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110367677|gb|EC931623.1|EC931623
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110725775|gb|EE102664.1|EE102664
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110362777|gb|EC926332.1|EC926332
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110711675|gb|EE088428.1|EE088428
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|30301784|gb|CB978578.1|CB978578
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110408639|gb|EC974278.1|EC974278
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCT
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110424755|gb|EC991126.1|EC991126
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|28959211|gb|CB339606.1|CB339606
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAACACCTTGCTTAAAGC-GTCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|33410346|gb|CF215973.1|CF215973
EST:     CTTGCACTCTCGCTATACTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|33410267|gb|CF215894.1|CF215894
EST:     CTTGCACTCTCGCTATACTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|30298969|gb|CB975763.1|CB975763
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|110694025|gb|EE070780.1|EE070780
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|351021749|gb|FQ437134.1|FQ437134
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA
EST: gi|28959198|gb|CB339600.1|CB339600
EST:     CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACT                         GCCGAGAAGATCAGCACCTTGCTTAAAGC-GTCAATGTGTCAGTAGAATCA
genomic: CTTGCACTCTCGCTATATTGATTCTCCACGACGATGGGATTCCCGTTACTgtatccttac ... tatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatatatatgctatcttgggaattggggttttctttgactgatatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCATACTGGCCGGGTCTGTTTGCTAAGCTTGTAGAGAAGAAGAGTGTAGATG
                                 ttctttgac  putative branch site 
     tatatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtggtgtcctgtaattgattttataatgttagaaaagtttatatatatatatatatgctatcttgggaattggggttttctttgactgatatttgctagGCCGAGAAGATCAGCACCTTGCTTAAAGCGGCCAATGTGTCAGTAGAATCATACTGGCCGGGTCTGTTTGCTAAGCTTGTAGAGAAGAAGAGTGTAGATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
ggtggtg
- - - -tcctgta
- - - - - - - - - - - - - - - tagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctatc