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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaacaaagcattatcatagttagtatcatggattcaacagaattgaaaataacaaggtatttaatgatggttcagGTGGGAGATCCAAACATGGACCATAAGTGCTGGGAGAGGCCTGAAGACATGGACACACCGCGCAATGTCTACAAGGTGTCTAAACAAAACCCAGGATCAG

Basic information

species Vitis vinifera
transcript Vv02s0025g02650.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0025g02650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S20_387V6.1 (Physcomitrella patens), 3'ss of exon 1
-----------gtgagcaacaaagcattatcatagttagtat-catggattcaa---cagaattgaaaataacaag-gtatttaatgat----ggttcagGTGGGAGATCCAAACATGGACCATAAGTGCTGGGAGAGGCCTGAAGACATGGACACACCGCGCAATGTCTACAAGGTGTCTAAACAAAACCCAGGATCAG
           |  ||    ||   | |    |||||| | | |||| | ||     |  |||    | | || || ||   |  ||        ||||||| || ||| || ||    | ||    |||||| |||| ||||| |||||||||||||||||||  | ||||||| |        | || || ||||| |
cagatatgggtgcaagatgaaagctaattctttagttaatttgcatgaaatctgattcgtaatcactattcaccagtgtcgatggtgtgcctaaattcagGTCGGTGATGCACACGCCAATCACCGATGCTGGCAGAGACCTGAGGACATGGACACACCGCGCACAGCCTACAAGATCGACGCCAACAATCCGGGATCTG

upper sequence: Vv02s0025g02650.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S100_137V6.1 (Physcomitrella patens), 3'ss of exon 2
---gtgagcaacaaagcattatcatagtt----------agtatcatggat--tcaacagaattgaaaataacaaggtattta-----atgatggttcagGTGGGAGATCCAAACATGGACCATAAGTGCTGGGAGAGGCCTGAAGACATGGACACACCGCGCAATGTCTACAAGGTGTCTAAACAAAACCCAGGATCAG
   |||||  | ||| || | |  |  |           | || |||  ||  ||||||  || ||   |      || | |       |  ||   ||||| || || || ||    || ||  | ||||||||||| || |||||||||||||||||||| |  | ||||||| |   |    | || || ||||| |
aaggtgagtcataaaacaatcttgtgatgtgaggattggaataccatacataatcaacaacatcgatggtgtgtgtgtgtgtgtgtgtgtcttgagccagGTCGGTGAACCGAATGCCGATCACCAATGCTGGGAGAGACCCGAAGACATGGACACACCGCGAACGGCCTACAAGATCGATTCCGACAATCCGGGATCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtatcatggattcaacagaattgaaaataacaaggtatttaatgatggttcagGTGGGAGATCCAAACATGGACCATAAGTGCTGGGAGAGGCCTGAAGACATGGACACACCGCGCAATGTCTACAAGGTGTCTAAACAAAACCCAGGATCAG
                    aattgaaaataacaa  TA-rich tract