1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatacgtctatctatctaaagcttttggtctatgcattgtattagttggcaaggaactttttgctgaggcttttaatcacttttgacagGTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAACATTGTTAACAAGGATGGGAAGCCTTACATTCAAGTCAAGATCAAGGATGGT
species | Vitis vinifera |
transcript | Vv02s0025g02140.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCGAAACGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAA GTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAAGATEST: gi|110725909|gb|EE102862.1|EE102862
genomic: GCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAAgtaatacgtc ... cttttgacagGTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAACAT
EST: GTCAATGCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAA GTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAAGATEST: gi|352777237|gb|FQ473870.1|FQ473870
genomic: GTCAATGCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAAgtaatacgtc ... cttttgacagGTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAACAT
EST: GTCAATGCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAA GTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAACATEST: gi|110685799|gb|EE062845.1|EE062845
genomic: GTCAATGCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAAgtaatacgtc ... cttttgacagGTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAACAT
EST: GTCAATGCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAA GTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAAGATEST: gi|110709376|gb|EE084780.1|EE084780
genomic: GTCAATGCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAAgtaatacgtc ... cttttgacagGTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAACAT
EST: GTCAATGCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAA GTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAAGATEST: gi|110703620|gb|EE080624.1|EE080624
genomic: GTCAATGCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAAgtaatacgtc ... cttttgacagGTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAACAT
EST: GTCAATGCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAA GTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAAGATEST: gi|33401982|gb|CF207609.1|CF207609
genomic: GTCAATGCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAAgtaatacgtc ... cttttgacagGTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAACAT
EST: GTCAATGCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAA GTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAAGATEST: gi|110687283|gb|EE064556.1|EE064556
genomic: GTCAATGCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAAgtaatacgtc ... cttttgacagGTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAACAT
EST: GTCAATGCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAA GTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAAGAT
genomic: GTCAATGCCGAAAGGACTATCTTTGATGTGAAGAGGCTTATTGGAAGAAAgtaatacgtc ... cttttgacagGTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAACAT
cattgtattagttggcaaggaactttttgctgaggcttttaatcacttttgacagGTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAACATTGTTAACAAGGATGGGAAGCCTTACATTCAAGTCAAGATCAAGGATGGT
ttttaat putative branch site (score: 3)
tcactttt CT-rich tract
ttttaatcactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatacgtctatctatctaaagcttttggtctatgcattgtattagttggcaaggaactttttgctgaggcttttaatcacttttgacagGTTTGAAGATAAGGAGGTTCAGAAGGACATGAAGCTTGTTCCGTACAACATTGTTAACAAGGATGGGAAGCCTTACATTCAAGTCAAGATCAAGGATGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG