1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttgtatttctttctaagaatcataaactctgcagtaattcatgtattcttttggggttttctcaaaaatattagattcaatattcagcacttcatgttttggattatgcaccattacctaatgttatacttgtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG
species | Vitis vinifera |
transcript | Vv02s0025g01720.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|28962679|gb|CB341712.1|CB341712
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CAGCTTCATGGAGTTTTTGAGG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAEST: gi|29783652|gb|CB349968.2|CB349968
genomic: CAGCTTCATGGAGTTTTTGA-Ggtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAA
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|110406653|gb|EC972233.1|EC972233
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|22015188|gb|BQ800222.1|BQ800222
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|37184496|gb|CF603850.1|CF603850
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|83275636|gb|DV939644.1|DV939644
genomic: CTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: AATTACTCCCCCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|110725596|gb|EE102277.1|EE102277
genomic: AATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|352777407|gb|FQ474041.1|FQ474041
genomic: CCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|37186440|gb|CF605793.1|CF605793
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|34547922|gb|CF516154.1|CF516154
genomic: CTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|34320297|gb|CF373051.1|CF373051
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: AGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTT-GGAGGGACAAEST: gi|30137123|gb|CB922461.1|CB922461
genomic: AGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGA-GGACAA
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|32265497|gb|CD716350.1|CD716350
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: GCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|26262984|gb|CA814047.1|CA814047
genomic: GCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|352768383|gb|FQ469558.1|FQ469558
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|33407310|gb|CF212937.1|CF212937
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|110726023|gb|EE103098.1|EE103098
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|32458755|gb|CD799929.1|CD799929
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGGGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|33406561|gb|CF212188.1|CF212188
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|352776555|gb|FQ474857.1|FQ474857
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|32272493|gb|CD721652.1|CD721652
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: GCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|29783826|gb|CB350276.2|CB350276
genomic: GCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|28965525|gb|CB344558.1|CB344558
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|110732396|gb|EE107656.1|EE107656
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|45770714|gb|CN006566.1|CN006566
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCC-TTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|32269333|gb|CD718492.1|CD718492
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: GCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|110376766|gb|EC941841.1|EC941841
genomic: GCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|110725858|gb|EE102801.1|EE102801
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|22012251|gb|BQ797285.1|BQ797285
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CCCTTTTCTTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGEST: gi|254917278|gb|GR906104.1|GR906104
genomic: CCCTTTTCCTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
EST: CTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAG GCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
genomic: CTCTACAATTACTCCACCCACCAGCTTCATGGAGTTTTTGAGgtttgtattt ... gtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAG
gcacttcatgttttggattatgcaccattacctaatgttatacttgtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG
acctaat putative branch site (score: 3)
taatgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtatttctttctaagaatcataaactctgcagtaattcatgtattcttttggggttttctcaaaaatattagattcaatattcagcacttcatgttttggattatgcaccattacctaatgttatacttgtatgttcagGCTGCAAGCTTTGGAGGAACAAACATTGATCCAACTGCTTGGGAGGACAAGAAGTGCCCTGGCGAATCACGCTTCCCTGCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT