Sequence
atgc intronic sequence ATGC exonic sequence...cacatgcttcttgttttctcttcctctagcccatatctaattgtatgtgttccaagtttttccttcttatccaatagtaactggcattttgtgttctcagGAATAAGCTTGACAGCAGAACAGTGGTCAGCCTTCAAGAAGAATGTACCCGCAATAGAGGAAGCCATCCAAAAGATGGAGTCAAGGTTGATGTGAGAACA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01700.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA03G41890.1 (Glycine max), 3'ss of exon 2
--cacatgcttcttgttttctcttcctctagcccatatctaattgtatgtgttccaagtttttccttcttatccaatagtaactggcattttgtgttctcagGAATAAGCTTGACAGCAGAACAGTGGTCAGCCTTCAAGAAGAATGTACCCGCAATAGAGGAAGCCATCCAAAAGATGGAGTCAAGGTTGATGTGAGAACA
| || || | | | | |||| || | || | ||| | |||| | | | | | | | || | ||| ||||| || | | ||||| ||||| |||||||||||| ||| || || ||||||||||| ||| |||||||||| |||| |
tgaatttgtctccatatatatgtggctctgttttgctgagaacttgat-tattctgaattttgaaactaaacatgtccctttcctgtactacttatttt-agGGATAAGTTTATCTTCGGAACAATGGTCGACCTTCAAGAAGAGTGTTCCTGCCATAGAGGAAGCTATCAAAAAGATGGAAGAAAGGATAGG--------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtgttccaagtttttccttcttatccaatagtaactggcattttgtgttctcagGAATAAGCTTGACAGCAGAACAGTGGTCAGCCTTCAAGAAGAATGTACCCGCAATAGAGGAAGCCATCCAAAAGATGGAGTCAAGGTTGATGTGAGAACA
tagtaac putative branch site (score: 1)
tgttctc putative PPT
aagttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cacatgcttcttgttttctcttcctctagcccatatctaattgtatgtgttccaagtttttccttcttatccaatagtaactggcattttgtgttctcagGAATAAGCTTGACAGCAGAACAGTGGTCAGCCTTCAAGAAGAATGTACCCGCAATAGAGGAAGCCATCCAAAAGATGGAGTCAAGGTTGATGTGAGAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
cacatgc
- - - - - - - - -ctcttcc
- - - - - - - - - - - - - -agcccat
- - - - - - - - - - - - - - - - - - - - - gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcattt