Sequence
atgc intronic sequence ATGC exonic sequencegtattattggttgtaagtgatgaggtatcttttacaatttttatggacaatgttttatgggaatttacaataattgtttcagCCAAGGAGCATGTTGTTGGTTGGTATAGCACAGGACCAAAACTGCGGGAGAATGATCTAGATATTCACAGACTATTCCATGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g01490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os04g56646.1 (Oryza sativa), 3'ss of exon 2
gtattattggttgtaagtgatg-aggtatcttttacaatttttatggacaat-gttttatgggaatttacaataattgtttcagCCAAGGAGCATGTTGTTGGTTGGTATAGCACAGGACCAAAACTGCGGGAGAATGATCTAGATATTCACAGACTATTCCATGA
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gtat-gcagtttgcaagtcttccatttgtttgacctgccctgtgtaactgattgtgttgtactgacgagctgttcttcgtgtagCCAAGGAGCATGTTGTTGGCTGGTACAGCACCGGTCCAAAACTCAGGGAGAACGACTTGGATATACACGCACTATTCAATAA
upper sequence: Vv02s0025g01490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G368908_T02 (Zea mays), 3'ss of exon 2
gtattattggttgtaagtgatgaggtatctt----ttacaat-ttttatggacaatgtt----ttatgggaatttacaataattgtttcagCCAAGGAGCATGTTGTTGGTTGGTATAGCACAGGACCAAAACTGCGGGAGAATGATCTAGATATTCACAGACTATTCCATGA
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gtatgctgtatcaaaattctcggtgcctgttgggcctgctctgtgctatggattctgttgtcctgatgagcatgagctgtttgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAATGACTTGGATGTCCATGCATTGTTCAACAG
upper sequence: Vv02s0025g01490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G061745_T03 (Zea mays), 3'ss of exon 2
-------gtattattggttgtaagtgatgaggtatcttttaca-atttttatggacaatgtttt-atgggaatttacaataattgtttcagCCAAGGAGCATGTTGTTGGTTGGTATAGCACAGGACCAAAACTGCGGGAGAATGATCTAGATATTCACAGACTATTCCATGA
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gtatgctctatcaaaatcctcaaattttgttgggcctgatccgtgctattgcttcttttgtcctgatgagcacgggctgtttgtggtgcagCCAAGGAGCATGTTGTTGGCTGGTACAGCACTGGCCCAAAACTAAGGGAGAACGACTTGGATGTCCATGCATTATTCAACAG
upper sequence: Vv02s0025g01490.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G05780.1 (Arabidopsis thaliana), 3'ss of exon 2
gtattattggttgtaagtgatgag-gtatcttttacaatttttatggacaatgttttatgggaatttacaataattgtttcagCCAAGGAGCATGTTGTTGGTTGGTATAGCACAGGACCAAAACTGCGGGAGAATGATCTAGATATTCACAGACTATTCCATGA
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gtattttctcaggaaactgatgcttatactgtttatgacattgtagaaatccatgcttttaacactacctacttgcttttcagCCAAGGAGCATGTTGTAGGTTGGTACAGCACAGGCCCTAAACTTCGAGAGAATGATTTGGATGTTCACGCGTTGTTCAATGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttttacaatttttatggacaatgttttatgggaatttacaataattgtttcagCCAAGGAGCATGTTGTTGGTTGGTATAGCACAGGACCAAAACTGCGGGAGAATGATCTAGATATTCACAGACTATTCCATGA
ttgtttc CT-rich tract
aatttacaataattgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattattggttgtaagtgatgaggtatcttttacaatttttatggacaatgttttatgggaatttacaataattgtttcagCCAAGGAGCATGTTGTTGGTTGGTATAGCACAGGACCAAAACTGCGGGAGAATGATCTAGATATTCACAGACTATTCCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA