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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttattcttgtataatgtctgaaaatttaatgaaactaccatccagtagttttcctgatctgatcttgttttctatttacttcgggtggtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGTATTTGCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTT

Basic information

species Vitis vinifera
transcript Vv02s0025g01050.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110723180|gb|EE100194.1|EE100194
EST:     TTCTAGTAACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110701145|gb|EE078418.1|EE078418
EST:     TTATCCATTTAAACCACCAAAG                         GTTGCTCTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110694210|gb|EE071119.1|EE071119
EST:     AGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: AGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|30302134|gb|CB978928.1|CB978928
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|37183571|gb|CF602925.1|CF602925
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110732791|gb|EE108387.1|EE108387
EST:     TTCTAGTAACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|27755206|gb|CB035961.1|CB035961
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110358580|gb|EC922893.1|EC922893
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110726912|gb|EE103108.1|EE103108
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|32250370|gb|CD716189.1|CD716189
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|26263872|gb|CA814935.1|CA814935
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110697591|gb|EE074711.1|EE074711
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGC
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110429311|gb|EC995802.1|EC995802
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|351027307|gb|FQ444556.1|FQ444556
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110725346|gb|EE101739.1|EE101739
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110725824|gb|EE102727.1|EE102727
EST:     TTCTAGTAACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110730922|gb|EE108558.1|EE108558
EST:     TTCTAGTAACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110694859|gb|EE072355.1|EE072355
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|351016609|gb|FQ424036.1|FQ424036
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|30305566|gb|CB982360.1|CB982360
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCGGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110692728|gb|EE068336.1|EE068336
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110402540|gb|EC960385.1|EC960385
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110400361|gb|EC966919.1|EC966919
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110374620|gb|EC939511.1|EC939511
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110386764|gb|EC951386.1|EC951386
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110717336|gb|EE093103.1|EE093103
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|161718484|gb|FC066334.1|FC066334
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|32250128|gb|CD715947.1|CD715947
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110729612|gb|EE105744.1|EE105744
EST:     TTCTAGTAACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTGGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|30302205|gb|CB978999.1|CB978999
EST:     TTTTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110414671|gb|EC980512.1|EC980512
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110370163|gb|EC934344.1|EC934344
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110697711|gb|EE074936.1|EE074936
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|45770869|gb|CN006721.1|CN006721
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110703502|gb|EE080402.1|EE080402
EST:     TTCTAGTAACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110695206|gb|EE072959.1|EE072959
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110690461|gb|EE067581.1|EE067581
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110709514|gb|EE085051.1|EE085051
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110383955|gb|EC948363.1|EC948363
EST:     TAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|30137594|gb|CB922932.1|CB922932
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|26265783|gb|CA816846.1|CA816846
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110688808|gb|EE067784.1|EE067784
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110368257|gb|EC932228.1|EC932228
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|71867528|gb|DT016583.1|DT016583
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110366411|gb|EC930316.1|EC930316
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110397584|gb|EC963337.1|EC963337
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|30320592|gb|CD003854.1|CD003854
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|352794746|gb|FQ475244.1|FQ475244
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATGTCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|110698439|gb|EE075937.1|EE075937
EST:     TCTAGTAACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|30305499|gb|CB982293.1|CB982293
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCGGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
EST: gi|30296851|gb|CB973645.1|CB973645
EST:     TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAG                         GTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT
genomic: TTCTAGTCACCATTCATTTTCCACCAGATTATCCATTTAAACCACCAAAGgtactgctat ... gtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtagttttcctgatctgatcttgttttctatttacttcgggtggtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGTATTTGCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTT
                      ttgttttctattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
attttattcttgtataatgtctgaaaatttaatgaaactaccatccagtagttttcctgatctgatcttgttttctatttacttcgggtggtttatgcagGTTGCTTTCAGGACTAAAGTGTTTCACCCTAATATCAATAGTAATGGTAGTATTTGCCTTGATATTTTGAAGGAGCAGTGGAGCCCAGCCCTTACAATTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - gaaaatt
- - - - - - - - - - - - - - - - -gaaacta
- - - - - - - - - - - - - - - - - - - - ccatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctga