Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgttcagattgttgtgagattctctgattttaatataatttgttattcttagttgagtatattgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCAGTTTGCCTCGGCTTTGAGGATTGAAATCAACCGGGGTTTTACTCTCTTG

Basic information

species Vitis vinifera
transcript Vv02s0025g00640.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110731085|gb|EE108905.1|EE108905
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|351056273|gb|FQ453735.1|FQ453735
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCTAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|71873398|gb|DT022453.1|DT022453
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|349832964|gb|FQ416342.1|FQ416342
EST:     CCACTGGCAATATTGTTCTTGTGGTCCAATGCCACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCTAGAGGATCCCGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|37184774|gb|CF604128.1|CF604128
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110723518|gb|EE100924.1|EE100924
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCAGCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|71874793|gb|DT023848.1|DT023848
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCAGCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|349828010|gb|FQ422878.1|FQ422878
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCG
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110371909|gb|EC936044.1|EC936044
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110684721|gb|EE062324.1|EE062324
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|30131910|gb|CB917249.1|CB917249
EST:     ACCACCTTCATCAACAA                         GGCACCAGCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: ACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110691625|gb|EE069943.1|EE069943
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|30296703|gb|CB973497.1|CB973497
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|349826619|gb|FQ418710.1|FQ418710
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCTAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|161711989|gb|FC059581.1|FC059581
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110689474|gb|EE065740.1|EE065740
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110372297|gb|EC936450.1|EC936450
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|161707696|gb|FC057423.1|FC057423
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCAGCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|349828802|gb|FQ419135.1|FQ419135
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|349820518|gb|FQ404013.1|FQ404013
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110695959|gb|EE074568.1|EE074568
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110730633|gb|EE107933.1|EE107933
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|294966775|gb|GW837794.1|GW837794
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|351023646|gb|FQ448197.1|FQ448197
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|71873938|gb|DT022993.1|DT022993
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|349823560|gb|FQ414970.1|FQ414970
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCTAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110693223|gb|EE069264.1|EE069264
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|351053564|gb|FQ462639.1|FQ462639
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCTAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|30253114|gb|CB970665.1|CB970665
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCAGCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110712849|gb|EE088256.1|EE088256
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCAGCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|351016650|gb|FQ424077.1|FQ424077
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|77586321|gb|DV222263.1|DV222263
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCAGCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|27582357|gb|CB005052.1|CB005052
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110371532|gb|EC935632.1|EC935632
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|349821472|gb|FQ404483.1|FQ404483
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110397930|gb|EC963929.1|EC963929
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|351033859|gb|FQ447897.1|FQ447897
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCTAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110721244|gb|EE098018.1|EE098018
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110410031|gb|EC975707.1|EC975707
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110706191|gb|EE081511.1|EE081511
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCAGCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110718326|gb|EE095031.1|EE095031
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|34548102|gb|CF516334.1|CF516334
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCAGCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|349824318|gb|FQ417689.1|FQ417689
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|33402635|gb|CF208262.1|CF208262
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110395723|gb|EC961393.1|EC961393
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110697469|gb|EE074483.1|EE074483
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|351041683|gb|FQ455893.1|FQ455893
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCTAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110690299|gb|EE067279.1|EE067279
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|349827000|gb|FQ419091.1|FQ419091
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110387135|gb|EC951780.1|EC951780
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110692075|gb|EE070905.1|EE070905
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|351033925|gb|FQ462980.1|FQ462980
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|349811034|gb|FQ406022.1|FQ406022
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|351013192|gb|FQ424897.1|FQ424897
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|161713780|gb|FC063780.1|FC063780
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|30296772|gb|CB973566.1|CB973566
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|351026162|gb|FQ428174.1|FQ428174
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|351012766|gb|FQ430329.1|FQ430329
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|161720413|gb|FC069855.1|FC069855
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110733104|gb|EE109003.1|EE109003
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|30252458|gb|CB970009.1|CB970009
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCGACCACCTTCATCAACAA                         GGCACCAGCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|352798976|gb|FQ480825.1|FQ480825
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCTAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
EST: gi|110707907|gb|EE084844.1|EE084844
EST:     GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAA                         GGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA
genomic: GCACTGGCAATATTGTTCTTGTGGTCCAATGCAACCACCTTCATCAACAAgtaagatgtt ... tgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattctctgattttaatataatttgttattcttagttgagtatattgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCAGTTTGCCTCGGCTTTGAGGATTGAAATCAACCGGGGTTTTACTCTCTTG
          ttttaat  putative branch site (score: 3)
         attttaatataatttg  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagatgttcagattgttgtgagattctctgattttaatataatttgttattcttagttgagtatattgtacgacagGGCACCACCACACATTCCAGAAGTCCACATTCCAGAGGATCCAGTTCTGCAGTTTGCCTCGGCTTTGAGGATTGAAATCAACCGGGGTTTTACTCTCTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT