Sequence
atgc intronic sequence ATGC exonic sequencegtaactttcttgatcacagttcattcaatcaatcaaattcatgctctccatcactctatcactaatctgaaaatgtgatcgttagTATGCATGTCGAAAAACACTAGCAGACAGTCGCCCTCGAGTACGTGGCAGGTTTGCACGCAATGATGAAATTGAAGAAACTCCCAAGGCTGAATGTTTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g00120.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: EFJ19353 (Selaginella moellendorffii), 3'ss of exon 3
gtaactttcttgatcacagttcattcaatcaatcaaattcatgctctccatcact-ctatcactaatctgaaaatgtgatcgttagTATGCATGTCGAAAAACACTAGCAGACAGTCGCCCTCGAGTACGTGGCAGGTTTGCACGCAATGATGAAATTGAAGAAACTCCCAAGGCTGAATGTTTCA-
| | | ||||| | | | ||| | | ||| | ||||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| ||||| || | | | || | | | || || | |
----------------------------------gtacaaacgaactccacaagaaccactacttacttacgcttgtactatttagTATGCATGTCGGAAAACGCTAGCAGACAGTCGGCCTCGAGTACGAGGAAGATTTGCCAAGAATGACGACGTCGCACAA-CACGAGAATCTAAAAGCAGAAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatcaaattcatgctctccatcactctatcactaatctgaaaatgtgatcgttagTATGCATGTCGAAAAACACTAGCAGACAGTCGCCCTCGAGTACGTGGCAGGTTTGCACGCAATGATGAAATTGAAGAAACTCCCAAGGCTGAATGTTTCA
cactaat putative branch site (score: 2)
aattcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactttcttgatcacagttcattcaatcaatcaaattcatgctctccatcactctatcactaatctgaaaatgtgatcgttagTATGCATGTCGAAAAACACTAGCAGACAGTCGCCCTCGAGTACGTGGCAGGTTTGCACGCAATGATGAAATTGAAGAAACTCCCAAGGCTGAATGTTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA