1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttcaaggattgctaggtggcaatgtctacaactttgcaaaatgagttttccatttttccgtcatgaaataacttttccatactttatgtgatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTATAACTTTGGAGAACTGCTTGCTCATCCAATT
species | Vitis vinifera |
transcript | Vv02s0012g02660.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTATEST: gi|351014718|gb|FQ437918.1|FQ437918
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTATEST: gi|110711237|gb|EE087522.1|EE087522
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGA-AATATCTATEST: gi|110712189|gb|EE089526.1|EE089526
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAAGATA-TATCTAEST: gi|110719329|gb|EE097178.1|EE097178
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGA-GATAATATCTA
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCEST: gi|110713457|gb|EE089396.1|EE089396
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTC
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGGAACATTTAAGCTG GGATT-GGCATTTGATTTATCGCTTTCCGCGCCGCTGGGAGATAA-ATCCTEST: gi|110712232|gb|EE089617.1|EE089617
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagG-ATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATC-T
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTATEST: gi|351030871|gb|FQ438907.1|FQ438907
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTATEST: gi|110713832|gb|EE090100.1|EE090100
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGA-AATATCTATEST: gi|110702107|gb|EE080439.1|EE080439
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTATEST: gi|110711790|gb|EE088671.1|EE088671
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTATEST: gi|351027874|gb|FQ448444.1|FQ448444
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTATEST: gi|110729815|gb|EE106179.1|EE106179
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATA-TATCTATEST: gi|110711621|gb|EE088310.1|EE088310
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATA-TATCTATEST: gi|351043427|gb|FQ451479.1|FQ451479
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTATEST: gi|110712204|gb|EE089557.1|EE089557
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGA-AATATCTATEST: gi|110711432|gb|EE087905.1|EE087905
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: ATAACTGGCATACACATCCA-TGGAGTCTCTCCCTGAAACATTTAAGCTG GATTTGGCATTTGATT-ATTCGCTTTCTGCGCTGCTEST: gi|349825445|gb|FQ419362.1|FQ419362
genomic: ATATCTGGCATACACATC-AGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTAT-CGCTTTCTGCGCTGCT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTATEST: gi|349825607|gb|FQ421706.1|FQ421706
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTTGGCATTTGATTTTATCGCTTTCTGCGCTGCTGGGAGA-AATATCTEST: gi|351019814|gb|FQ439631.1|FQ439631
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTT-GGCATTTGATTT-ATCGCTTTCTGCGCTGCTGGGAGATAATATCT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTATEST: gi|161718279|gb|FC066030.1|FC066030
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
EST: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTG GATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
genomic: TATATCTGGCATACACATCAGTGGAGTCTCTCTCTGAAACATTTAAGCTGgtatgttact ... gatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTAT
gttttccatttttccgtcatgaaataacttttccatactttatgtgatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTATAACTTTGGAGAACTGCTTGCTCATCCAATT
aaataac putative branch site (score: 2)
tttatgtgatatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcaaggattgctaggtggcaatgtctacaactttgcaaaatgagttttccatttttccgtcatgaaataacttttccatactttatgtgatattttagGATTTGGCATTTGATTTATCGCTTTCTGCGCTGCTGGGAGATAATATCTATAACTTTGGAGAACTGCTTGCTCATCCAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - -ttgctag
- - - - - - - - - - caatgtc
- - - - - - - - - - - - - - - - - - - aaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatact