Sequence
atgc intronic sequence ATGC exonic sequence...tctctcttgatacatgaagaagcaagcaactaaattctgtttccttgtgatacctaatcttttatgttttttttccccttttatgttctgaaaaaaacagGGTGTCAACAAGGGTCTTGTAGCGGAACGTCTCCTTGTAACAATGCGGCAGAAGGGGATGCTTCCAGATTTTGTGCTATGTATTGGAGATGATCGATCGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g01680.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA10G41680.1 (Glycine max), 3'ss of exon 2
tctctcttga-tacatgaagaagcaagcaactaaattc--tgtttccttgtgatacctaatcttttatgttttttttccccttttatgttctgaaaaaaacagGGTGTCAACAAGGGTCTTGTAGCGGAACGTCTCCTTGTAACAATGCGGCAGAAGGGGATGCTTCCAGATTTTGTGCTATGTATTGGAGATGATCGATCGG
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--tctaaagaacttgtgtagatcacaggaattaattctaatatttggtcatgaaatgtggttgggt-tgattatctcctcttgttgttcaacttttggtgcagGGTGTGAGTAAGGGTATTGTAGCAGAACGTCTTCTCTTAACAATGCAACAAAAGGGAGTGTTTCCAGATTTTGTTCTATGCATTGGAGATGACAGATCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110397120|gb|EC962841.1|EC962841EST: GTCAACATATTGTAGAAGTTAAGCCTCAG GGTGTCAACAAGGGTCTTGTAGCGGAACGTCTCCTTTTAACAATGCGGCAG
genomic: GTCAACATATTGTAGAAGTTAAACCTCAGgttagtagct ... aaaaaaacagGGTGTCAACAAGGGTCTTGTAGCGGAACGTCTCCTTGTAACAATGCGGCAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtgatacctaatcttttatgttttttttccccttttatgttctgaaaaaaacagGGTGTCAACAAGGGTCTTGTAGCGGAACGTCTCCTTGTAACAATGCGGCAGAAGGGGATGCTTCCAGATTTTGTGCTATGTATTGGAGATGATCGATCGG
acctaat putative branch site (score: 3)
taatcttttatgtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctctcttgatacatgaagaagcaagcaactaaattctgtttccttgtgatacctaatcttttatgttttttttccccttttatgttctgaaaaaaacagGGTGTCAACAAGGGTCTTGTAGCGGAACGTCTCCTTGTAACAATGCGGCAGAAGGGGATGCTTCCAGATTTTGTGCTATGTATTGGAGATGATCGATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
tctctct
- - - - - - catgaag
- - - - - - - - - - -gcaagca
- - - - - - - - - - - - - - - - - - - - ttccttg
- - - - - - - - - - - - - - - - - - - - - - - -tgatacc