1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cctgtcccttgggtgttcctcttgaatagtcattaattgtataaagggatattctgtcttttgcaatagttgatgcctttactatttatcttgtacacagGCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCTATTCGTAACAACTTTGTTCTGATTTATGAGCTATTGGATG
species | Vitis vinifera |
transcript | Vv02s0012g00910.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAG GCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCTEST: gi|71864801|gb|DT013856.1|DT013856
genomic: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAGgtagttgtca ... ttgtacacagGCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCT
EST: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAG GCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCTEST: gi|71863379|gb|DT012434.1|DT012434
genomic: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAGgtagttgtca ... ttgtacacagGCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCT
EST: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAG GCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCTEST: gi|161712815|gb|FC062338.1|FC062338
genomic: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAGgtagttgtca ... ttgtacacagGCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCT
EST: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAG GCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCTEST: gi|71863591|gb|DT012646.1|DT012646
genomic: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAGgtagttgtca ... ttgtacacagGCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCT
EST: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAG GCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCTEST: gi|71857060|gb|DT006115.1|DT006115
genomic: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAGgtagttgtca ... ttgtacacagGCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCT
EST: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAG GCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCTEST: gi|352777816|gb|FQ466869.1|FQ466869
genomic: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAGgtagttgtca ... ttgtacacagGCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCT
EST: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAG GCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCTEST: gi|71863093|gb|DT012148.1|DT012148
genomic: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAGgtagttgtca ... ttgtacacagGCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCT
EST: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAG GCTGTTGCGCTGTTCAAA
genomic: TGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAGgtagttgtca ... ttgtacacagGCTGTTGCGCTGTTCAAA
gggatattctgtcttttgcaatagttgatgcctttactatttatcttgtacacagGCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCTATTCGTAACAACTTTGTTCTGATTTATGAGCTATTGGATG
agttgat putative branch site (score: 5)
tttatctt putative PPT
tttactatttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgtcccttgggtgttcctcttgaatagtcattaattgtataaagggatattctgtcttttgcaatagttgatgcctttactatttatcttgtacacagGCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCTATTCGTAACAACTTTGTTCTGATTTATGAGCTATTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
cctgtcc
- - - - ttgggtg
- - - - - - - - -cctcttg
- - - - - - - - - - - - - - - - - - - - - aaaggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcct