Sequence
atgc intronic sequence ATGC exonic sequencegtaatctctttccccagacatcctttagattaattcttggatgctcactaggttgtaactgtcttgatcatggaattctttggttaaatgaacctttttcatacagGCACTGTTTCAGAAAATTGCAGCTTTACCAGGAATGGAAACACTTTCTTCAGCCAAGCAAGAAGACATGGTTGATGTGAACCTAAAGTCTCCCAGCCTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g00790.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os07g31370.1 (Oryza sativa), 3'ss of exon 5
------------------------------------------------------------------------------gtaatctctttccccagacatcctttagattaattcttggatgctca---ctaggttgtaactgtcttgatcatggaattctttggttaaatgaacctttttcatac-----agGCACTGTTTCAGAAAATTGCAGCTTTAC---CAGGAATGGAAACACTTTCTTCAGCCAAGCAAGAAGACATGGTTGATGTGAACCTAAAGTCTCCCAGCCTCA
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gtgtgcttaggaaaatataaatttcttgcatatcctttgtattacatcaggagattagcacgcgtgtagatctggcacattttcagaaagttcaaaatcgtgttcttttatttgggagatgctgaaatctgaattatttatgggtta--catggggataatttgttctgacattttttctcatgctgatcagGCGTTGTTCCGTAAGATTGCGGCTGCACTTCCTGGAATGGAGACCCTCTCATCAGCAAAGCAGGAAGACATGGTTGATGTGAACTTGAAGTCAAGCAACG---
upper sequence: Vv02s0012g00790.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G075719_T02 (Zea mays), 3'ss of exon 5
gtaatctctttccccagacatcctttagattaattcttggatgctcactaggttgtaactgtcttgatcatggaattctttggttaaatgaacctttttcatacagGCACTGTTTCAGAAAATTGCAGCT---TTACCAGGAATGGAAACACTTTCTTCAGCCAAGCAAGAAGACATGGTTGATGTGAACCTAAAGTCTCCCAGCCTCA
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--atgccttttcttagggaaggacctttatt--tttctgcatgtctgtatgtctttatatgtcaacatatttttttcgttttgc--actgaccaacttgtgagcagGCGCTGTTCCGTAAAATTGCTGCTGCCCTTCCTGGTATGGAGACACTCTCATCAGCGAAGCAGGAAGACATGGTTGATGTGAACTTGAGGTCTGGCAATG---
upper sequence: Vv02s0012g00790.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G41090.1 (Glycine max), 3'ss of exon 6
gtaatctctttccccagacatcctttagattaattcttggatgctcactaggttgtaac---tgtcttgatcatggaattctttggttaaatgaacctttttcatacagGCACTGTTTCAGAAAATTGCAGCT---TTACCAGGAATGGAAACACTTTCTTCAGCCAAGCAAGAAGACATGGTTGATGTGAACCTAAAGTCTCCCAGCCTCA
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--------attagaaggctaactgtttcagttatcagatcaccttcatttgcatgcaatccatgcatgttttacatttttccctgttttggcttattgttat-atttagGCCCTCTTTCGAAAAATTGCTGCTGCATTACCTGGAATGGAAACACTATCCTCCACAAAACAAGAAGATATGGTTGACGTGAACCTAAGATCTTCTGGTG--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgtaactgtcttgatcatggaattctttggttaaatgaacctttttcatacagGCACTGTTTCAGAAAATTGCAGCTTTACCAGGAATGGAAACACTTTCTTCAGCCAAGCAAGAAGACATGGTTGATGTGAACCTAAAGTCTCCCAGCCTCA
cctttttcat CT-rich tract
ttaaatgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatctctttccccagacatcctttagattaattcttggatgctcactaggttgtaactgtcttgatcatggaattctttggttaaatgaacctttttcatacagGCACTGTTTCAGAAAATTGCAGCTTTACCAGGAATGGAAACACTTTCTTCAGCCAAGCAAGAAGACATGGTTGATGTGAACCTAAAGTCTCCCAGCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG