Sequence
atgc intronic sequence ATGC exonic sequence...tgataccattcaaatcatttttaatggaggcattttcaaccggttggggtgttattcagtggaattacttaaaaagagtgattatttcctggatttcaagGTTGAAGTGAGGCAAAGAGAAGGAGGAGCTGTCAACATCCACATGTTTTGTGCTCGTAGACCCGGCCTTTTGCTCTCTGCCATGAGGGCTTTGGATGGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0244g00130.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os11g32100.1 (Oryza sativa), 3'ss of exon 2
tgataccattcaaatcatttttaatggaggcattttcaaccggttggggtgttattcagtggaattacttaaaaagagtgattatttcctggatttc----aagGTTGAAGTGAGGCAAAGAGAAGGAGGAGCTGTCAACATCCACATGTTTTGTGCTCGTAGACCCGGCCTTTTGCTCTCTGCCATGAGGGCTTTGGATGGCC
| | || | |||| | || |||||| | | ||| | ||| | || | | || ||| || || | |||||||| || |||| || ||||| | |||||||| ||||||||||| |||||||| || ||||| || ||||||||||||||||||| | || ||||
--gtgcaatgtggttgatttatgcatcag--attttctaactattgccaacctgatcaagcatttgacacactttctgacctttttttctacatcttgcaaaagGTTGAGGTTAGGCTGAGGGAAGGCCGGGCTGTCAATATCCACATGTTCTGTGCTCGGAGGCCCGGTCTACTGCTCTCTGCCATGAGGGCCGTCGAAGGCC
upper sequence: Vv01s0244g00130.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G26290.1 (Glycine max), 3'ss of exon 2
------tgataccattcaaatcatttttaatggaggcattttcaaccggttggggtgttattcagtggaattacttaaaaagagtgattatttcctggatttcaagGTTGAAGTGAGGCAAAGAGAAGGAGGAGCTGTCAACATCCACATGTTTTGTGCTCGTAGACCCGGCCTTTTGCTCTCTGCCATGAGGGCTTTGGATGGCC
|| ||| | || ||| ||| | | | ||| | | || | |||| || | || ||| |||| | || |||| || || | | ||| ||||| ||||||||||| ||||| ||||||||||| | ||||| || ||||| || ||| |||||||||| ||||| |||
gaggaacaattagatttaggagatagttattggttctcacagaacttaatggcagtgcaactgag-gaaatt--ttgacttga---attttttctgaaacttatagGTGGAGGTTACGGTAAGGGAAGGGGGAGCTGTCAATATCCATATGTTTTGTGCCCACAGACCAGGTCTTTTACTTTCTACCATGAGGGCAATGGATAGCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggggtgttattcagtggaattacttaaaaagagtgattatttcctggatttcaagGTTGAAGTGAGGCAAAGAGAAGGAGGAGCTGTCAACATCCACATGTTTTGTGCTCGTAGACCCGGCCTTTTGCTCTCTGCCATGAGGGCTTTGGATGGCC
tttcctg CT-rich tract
aattacttaaaaaga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgataccattcaaatcatttttaatggaggcattttcaaccggttggggtgttattcagtggaattacttaaaaagagtgattatttcctggatttcaagGTTGAAGTGAGGCAAAGAGAAGGAGGAGCTGTCAACATCCACATGTTTTGTGCTCGTAGACCCGGCCTTTTGCTCTCTGCCATGAGGGCTTTGGATGGCC
- - -ccattca
- - - - - - - - - - - - -ggaggca
- - - - - - - - - - - - - - - - - ttcaacc
- - - - - - - - - - - - - - - - - - - - -ggttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaga