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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttagttgttatactacaaattaattaactttggaaaatgaccattcaaataaattcagcttttcatttacttttgctgggtgggtttcactttccagGCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTTCCTGGTTGTGACAAG

Basic information

species Vitis vinifera
transcript Vv01s0244g00010.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110697604|gb|EE074737.1|EE074737
EST:     GAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGG                         GCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTT
genomic: GAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGGgtattttagt ... cactttccagGCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTT
EST: gi|110714473|gb|EE091418.1|EE091418
EST:     TGAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGG                         GCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTT
genomic: TGAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGGgtattttagt ... cactttccagGCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTT
EST: gi|32245670|gb|CD711489.1|CD711489
EST:     CAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGG                         GCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGCTTTTGCAATCACTTGTT
genomic: CAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGGgtattttagt ... cactttccagGCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTT
EST: gi|34416539|gb|CF415293.1|CF415293
EST:     TGAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGG                         GCAAGAAGAGAGAAAATCAGTGAAAGAATGAAGCTTTTGCAATCACTTGTT
genomic: TGAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGGgtattttagt ... cactttccagGCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTT
EST: gi|110695430|gb|EE073439.1|EE073439
EST:     GAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGG                         GCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGCTTTTGCAATCACTTGTT
genomic: GAGAGCAAGGAGGGGTGAAGCAACAGACAGTCACAGCCTTGCTGAAAGGgtattttagt ... cactttccagGCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcaaataaattcagcttttcatttacttttgctgggtgggtttcactttccagGCAAGAAGAGAGAAAATCAGTGAGAGAATGAAGTTTTTGCAATCACTTGTTCCTGGTTGTGACAAG
                                          tttcactttcc  CT-rich tract
                 ttttcatttactttt  TA-rich tract