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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaaaacttaagGTAGCAATAAATGGATTTGGAAGAATAGGAAGGAATTTCTTGAGGTGCTGGCACAGCAGGAAGGACTCTCCCCTCTAGAGGTTGTGGCCATAAACGACAC

Basic information

species Vitis vinifera
transcript Vv01s0150g00500.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00500.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G04940.1 (Glycine max), 3'ss of exon 2
------------gcaaaacttaa-gGTAGCAATAAATGGATTTGGAAGAATAGGAAGGAATTTCTTGAGGTGCTGGCACAGCAGGAAGGACTCTCCCCTCTAGAGGTTGTG-GCCATAAACGACAC-------------------------------------------------------------------------------
               |||| | | |||| | | |||   | || ||| | ||  || |   |       ||  |  ||  || | ||  ||     | | |  ||||||   ||  |  | || ||                                                                               
tatgaattgttaattaaacatgatggtatccaaaaagttaattagaaaagtaaaaatgtgctgt-----gttttaacaatgctgcaattacatgtacttttgaagGTTGGAAGCAGTGGAGGATACAAGAAGGGTGTGACAGAAGCAAAACTGAAGGTTGCCATAAACGGATTTGGAAGGATTGGAAGGAACTTCTTGAGGTGCT

upper sequence: Vv01s0150g00500.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA19G28240.1 (Glycine max), 3'ss of exon 2
--gcaaaacttaagGTAGCAATAAATGGATTTGGAAGAATAG-----GAAGGAATTTCTTGAGGTGCT-GGCACAGCAGGAAGGACTCTCCCCTCTAGAGGTTGTG-GCCATAAACGACAC-------------------------------------------------------------------------------
     ||   | |  ||   || |  | ||    ||   ||       ||| ||     ||| ||| |   ||  |  | |   |      | | |  ||||||   ||  |  | || ||                                                                               
taatgaattgttaattatacatgatggtatccaaaaagttaattagaaaagtaaaaatgtgaagtgtttaacaatgttgcatctatatgtacttttgaagGTTGGAAGCAGTGGAGGATACAAGAAGGGTGTGACAGAAGCAAAACTGAAGGTTGCCATAAACGGGTTTGGAAGGATTGGAAGGAACTTCTTGAGGTGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaaacttaagGTAGCAATAAATGGATTTGGAAGAATAGGAAGGAATTTCTTGAGGTGCTGGCACAGCAGGAAGGACTCTCCCCTCTAGAGGTTGTGGCCATAAACGACAC
                                                                                                                                  aaaacttaa  TA-rich tract