Sequence
atgc intronic sequence ATGC exonic sequence...ttgttattcagttttggtgtttcttatggatgaaatcaacatttctttccacatagcatgcttgtcatggtttcaattgtctctgttctctgaattgcagTGAAGGGCTTGGGGAAGGATATGATGGGGACATTGCTTTTGCAAGTGCTCTAGAAACTTTTGGTGGAGGACACAATGATCCTATTAGTGTGGCTTTTGGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM5G872204_T02 (Zea mays), 3'ss of exon 2
-----ttgttattcagttttggtgtttcttatggatgaaatcaacatttctttccacatagcatgcttgtcatggtttcaattgtctctgttctctga-attgcagTGAAGGGCTTGGGGAAGGATATGATGGGGACATTGCTTTTGCAAGTGCTCTAGAAACTTTTGGTGGAGGACACAATGATCCTATTAGTGTGGCTTTTGGA
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gtaagtaaccatccattgcccatgcatttattt--tgtaatccggagtatggttgagct-gtaagtcactccctgcgccatatgctgatatgcccttttgtttcagTGAAGGACTAGGGGAAGCATACGATGGAGATATTGCATTTGCCAGCTCACTTGAAACATTTGGAGGAGGCCACAATGATCCAATGAGTGTCGCTTTTGGT
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G28890.2 (Glycine max), 3'ss of exon 2
ttgttattcagttttggtgtttcttatggatgaaatcaacatttctttccacatagcatgcttgtcat-ggtttcaattg-tctctgttctctgaattgcagTGAAGGGCTTGGGGAAGGATATGATGGGGACATTGCTTTTGCAAGTGCTCTAGAAACTTTTGGTGGAGGACACAATGATCCTATTAGTGTGGCTTTTGGA
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ttctcacagcttatcataatatattgaatattgattttgaagatgttag-atat-gtattttctttataggctttatttgctttcacttttgtactttccagTGAAGGACTTGGGGAGGCCTATGATGGAGATATTGCATTTGCAAGTGCCTTGGAAACTTTTGGTGGTGGGCATAATGACCCAATCAGTGTGGCTTTTGGA
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G51810.1 (Glycine max), 3'ss of exon 2
-ttgttattcagttttggtgtttcttatggatgaaatcaacatttctttccacatagcatgcttgtcat-ggtttcaattgtctctgttctctgaattgcagTGAAGGGCTTGGGGAAGGATATGATGGGGACATTGCTTTTGCAAGTGCTCTAGAAACTTTTGGTGGAGGACACAATGATCCTATTAGTGTGGCTTTTGGA
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tttctcacagcttatcataacatattgaatattgattttgaagatgttag-atat-gtattttctttatagactttaattgctttacctttgtactttccagTGAAGGACTTGGGGAGGCCTATGATGGAGATATTGCATTTGCAAGTGCCTTGGAAACTTTTGGTGGTGGGCATAATGACCCAATCAGTGTGGCTTTTGGA
upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT5G13300.1 (Arabidopsis thaliana), 3'ss of exon 2
--ttgtta-ttcag--ttttggtgtttcttatggatg-aaatcaacattt----ctttccac-----atagcatgcttgtcatggtttcaattgtctctgttctctgaattgcagTGAAGGGCTTGGGGAAGGATATGATGGGGACATTGCTTTTGCAAGTGCTCTAGAAACTTTTGGTGGAGGACACAATGATCCTATTAGTGTGGCTTTTGGA
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gtatgctagttcaaattttcacagctaattaggattgtagctctacatttagagttttcttctggctgaaacatgtatcttttaacagcgatagattattctttcttt-ttacagTGAAGGACTAGGCGAGGCATACGATGGGGACATTGCTTTCGCAAGTGCACTTGAAACATTTGGTGGAGGCCATAATGATCCAATAAGTGTGGCTTTTGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttccacatagcatgcttgtcatggtttcaattgtctctgttctctgaattgcagTGAAGGGCTTGGGGAAGGATATGATGGGGACATTGCTTTTGCAAGTGCTCTAGAAACTTTTGGTGGAGGACACAATGATCCTATTAGTGTGGCTTTTGGA
ttgtctctgttctct CT-rich tract
tttcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgttattcagttttggtgtttcttatggatgaaatcaacatttctttccacatagcatgcttgtcatggtttcaattgtctctgttctctgaattgcagTGAAGGGCTTGGGGAAGGATATGATGGGGACATTGCTTTTGCAAGTGCTCTAGAAACTTTTGGTGGAGGACACAATGATCCTATTAGTGTGGCTTTTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - tggtgtt
- - - - - - - - - - - cttatgg
- - - - - - - - - - - - - - - - aaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - ccacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggtt