Sequence
atgc intronic sequence ATGC exonic sequencegtacaaccatctggtacatgttcttatatcaataggtgaagggacgacttctctttgaatttgaggcttaactaactttcctcatttcgttgtaattgcttgcagTATGTTGTGATTGATTACCTTTGGTATAGAAGAAAGGTGGAGGGTGCTTACACTGATTCTTTAGGATTTGATGTGATTGACAAATGGGGGAGGATGGCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G37760.2 (Glycine max), 3'ss of exon 2
gtacaaccatctggtacatgttcttatatcaataggt--gaagggacgacttctctt-tgaatttgaggcttaactaactttcctcatttcgttgtaattgcttgcagTATGTTGTGATTGATTACCTTTGGTATAGAAGAAAGGTGGAGGGTGCTTACACTGATTCTTTAGGATTTGATGTGATTGACAAATGGGGGAGGATGGCTC
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gtatagtttctgaggaaccatagcta-atggatgagtttgaagttagtagtactttcattagatatagacatga-taaccttcctt---------caaacccttgtagTATGTTGTAGTGGATTACCTCTGGTATAGAAGGAAAGTAGAGGGCGCTTATCATGATTCTCTCGGATTTGATGTGATTGATGAATGGGGGAGGATGGTTC
upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G13960.1 (Glycine max), 3'ss of exon 2
gtacaaccatctggtacatgtt-cttatatcaataggtgaagggacgacttctctttga-atttgaggcttaactaactttc--ctcatttcgttgta--attgcttgcagTATGTTGTGATTGATTACCTTTGGTATAGAAGAAAGGTGGAGGGTGCTTACACTGATTCTTTAGGATTTGATGTGATTGACAAATGGGGGAGGATGGCTC
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-----------gtatagatactgcaaagaacaataacttatgg-atgatttatctgtgttagcagtgctttggttagatatggactgatttctttccatcaactcttgtagTTTGTCGTGGTGGATTACCTCTGGTATAGGAAGAAAGTCAAGGGTGCTTACCCTGATTCTCTTGGATTTGACGTGATCGATGAATGGGGAAGGATGATCC
upper sequence: Vv01s0137g00630.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G26380.1 (Arabidopsis thaliana), 3'ss of exon 2
gtacaaccatctggtacatgttcttatatcaataggtgaagggacgacttctctttgaatttgaggcttaactaactttcctcatttcgttgtaattgcttgcagTATGTTGTGATTGATTACCTTTGGTATAGAAGAAAGGTGGAGGGTGCTTACACTGATTCTTTAGGATTTGATGTGATTGACAAATGGGGGAGGATGGCTC
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-----gtaattgtgagtttctttatcctttagaatgtaaaag-----------tttaggttt-----ttaattgcttgtgtttgtgtgtgttgatttggatacagTATGTTGTGGTGGATTACCTTTGGTATAGAAAGAAAGTTGAAGGAGCTTATGTGGATTCTCTTGGGTTTGATGTGATTGATGAATGGGGAAGATTGCATC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctctttgaatttgaggcttaactaactttcctcatttcgttgtaattgcttgcagTATGTTGTGATTGATTACCTTTGGTATAGAAGAAAGGTGGAGGGTGCTTACACTGATTCTTTAGGATTTGATGTGATTGACAAATGGGGGAGGATGGCTC
aactaac putative branch site (score: 1)
ttaactaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacaaccatctggtacatgttcttatatcaataggtgaagggacgacttctctttgaatttgaggcttaactaactttcctcatttcgttgtaattgcttgcagTATGTTGTGATTGATTACCTTTGGTATAGAAGAAAGGTGGAGGGTGCTTACACTGATTCTTTAGGATTTGATGTGATTGACAAATGGGGGAGGATGGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG