Sequence
atgc intronic sequence ATGC exonic sequence...gtggttttctcctacctatatactgcaagagggagctggtggttttcttatttggaggaataagttcatcttttttttggggtataaaatggttttgcagACAGAGAAAATAGAACTGGAAACTACTGTAGTGGATGAAACAAAGGAACGGGAGTCATACTGTGGCCAAGGAAATAGAAGATTCAGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0137g00290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G37650.1 (Glycine max), 3'ss of exon 2
gtggttttctcctacctatatactgcaagagggagctggtggttttcttatttggaggaataa--gttcatcttttttttggggtataaaatggttttgcagACAGAGAAAATAGAACTGGAAACTACTGTAGTGGATGAAACAAAGGAACGGGAGTCATACTGTGGCCAAGGAAATAGAAGATTCAGTG
| ||| | | | | || | | || | | | | ||| | ||| | | |||| || ||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| || ||||
--gaatttattcaattcacatcccatttgctcctatatatgctgtcagtgccatgttaaatgatgattcttactagttttctcttaaaaataattcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGTGAATCATACTGTGGACAAGGAAATAGAAGGTTTAGTG
upper sequence: Vv01s0137g00290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G01590.1 (Glycine max), 3'ss of exon 2
------gtggttttctcctacctatatactgcaagagggagctggtggttttcttatttggaggaataagttcatcttttttttggggtataaaatggttttgcagACAGAGAAAATAGAACTGGAAACTACTGTAGTGGATGAAACAAAGGAACGGGAGTCATACTGTGGCCAAGGAAATAGAAGATTCAGTG
||| || ||| ||| || | | || | || || | || | | | ||||| ||| ||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||| || ||||
tcacatcccatttgctactatatatgctctcagtgccatattaaatgatgaaattctt------attagtctagtttgatttttctcgtaaaaacaattcatgcagACAGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAAACAAAGGAACGTGAATCATACTGTGGACAAGGAAATAGAAGGTTTAGTG
upper sequence: Vv01s0137g00290.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G13170.1 (Arabidopsis thaliana), 3'ss of exon 2
----gtggttttctcctacctatatactgcaagagggagctggtggttttcttattt-ggaggaataagttcatcttttttttggggtataaaatggttttgcagACAGAGAAAATAGAACTGGAAACTACTGTAGTGGATGAAACAAAGGAACGGGAGTCATACTGTGGCCAAGGAAATAGAAGATTCAGTG
||||| |||| |||| | | | ||||| || || | | || | ||||| | | || | ||||||||| ||||||||||| |||||| |||| || || |||||||||||||| | || || | |||||| || |||| || |||| ||||
cactaccaccccctcctgtctatcgtctgctttatttggtttacagtttttcagcttcacagtagaatatttgattcgtttttt---ttttaatta--tttgcagACTGAGAAAATAGAGCTGGAAGCTACCGTCGTTGATGAAACAAAGGAGCATGACTCTTGCTGTGGACAGGGAA---GACGATTTAGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttatttggaggaataagttcatcttttttttggggtataaaatggttttgcagACAGAGAAAATAGAACTGGAAACTACTGTAGTGGATGAAACAAAGGAACGGGAGTCATACTGTGGCCAAGGAAATAGAAGATTCAGTG
ttcatctttttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtggttttctcctacctatatactgcaagagggagctggtggttttcttatttggaggaataagttcatcttttttttggggtataaaatggttttgcagACAGAGAAAATAGAACTGGAAACTACTGTAGTGGATGAAACAAAGGAACGGGAGTCATACTGTGGCCAAGGAAATAGAAGATTCAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - ctcctac
- - - - - - - - - - tactgca
- - - - - - - - - - - - - - - - gagctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaat