1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttattttttatatcaactgcaagttttgttggattcttgtgacctggtaagtagatctaagctcaaattgaactctgatggttgaacttttgaaaaacagGTCAAAAATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGTTGAAGGAGCATTTTAAGAGGCTCTCTGGTACCGACCTTCCAATTAAATCA
species | Vitis vinifera |
transcript | Vv01s0127g00260.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACG GTCAAAAATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGTTEST: gi|294966134|gb|GW837501.1|GW837501
genomic: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACGgtattgcaat ... tgaaaaacagGTCAAAAATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGTT
EST: CTCGTCCATCAGAAGCCCGAACGCCTGCCTTTCTTACTTCTCCCTCAACG GTCAAAAATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGTTEST: gi|71860189|gb|DT009244.1|DT009244
genomic: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACGgtattgcaat ... tgaaaaacagGTCAAAAATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGTT
EST: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACG GT-AAAACATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGTEST: gi|110731355|gb|EE105692.1|EE105692
genomic: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACGgtattgcaat ... tgaaaaacagGTCAAAA-ATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGT
EST: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACG GTCAAAAATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGTTEST: gi|110730143|gb|EE106883.1|EE106883
genomic: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACGgtattgcaat ... tgaaaaacagGTCAAAAATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGTT
EST: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACG GTCAAAAATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGTTEST: gi|294965669|gb|GW837268.1|GW837268
genomic: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACGgtattgcaat ... tgaaaaacagGTCAAAAATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGTT
EST: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACG GT-AAAACATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGTEST: gi|71863321|gb|DT012376.1|DT012376
genomic: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACGgtattgcaat ... tgaaaaacagGTCAAAA-ATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGT
EST: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACG GT-AAAACATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGTEST: gi|71861152|gb|DT010207.1|DT010207
genomic: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACGgtattgcaat ... tgaaaaacagGTCAAAA-ATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGT
EST: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACG GT-AAAACATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGT
genomic: CTTGTCCATCAGAAGCCCGTACGCCTACCTTTCTTACGTCTCCCTCAACGgtattgcaat ... tgaaaaacagGTCAAAA-ATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGT
ggtaagtagatctaagctcaaattgaactctgatggttgaacttttgaaaaacagGTCAAAAATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGTTGAAGGAGCATTTTAAGAGGCTCTCTGGTACCGACCTTCCAATTAAATCA
ctctgat putative branch site (score: 4)
ctttt putative PPT
ttttgaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattttttatatcaactgcaagttttgttggattcttgtgacctggtaagtagatctaagctcaaattgaactctgatggttgaacttttgaaaaacagGTCAAAAATGGCGCGCAAGAAGATCAGAGAGTACGATTCCAAGAGGCTGTTGAAGGAGCATTTTAAGAGGCTCTCTGGTACCGACCTTCCAATTAAATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - -caactgc
- - - - - - - - - - - - -ttgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgg