1 5' 3' | 2 5' 3' |
gtaggttcttatcacttttagaatcaaattttctactattttctttagagtatagattatatataatggtgatctgaccagtaactgctcgtgttttgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGAATTTTGGAAGAGAAAGAAGAAAATTTAGGTCCCCAAATACCCGTTACAA
species | Vitis vinifera |
transcript | Vv01s0026g02710.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGA TTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGAEST: gi|110392611|gb|EC958153.1|EC958153
genomic: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttctt ... tgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
EST: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGA TTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGAEST: gi|110695448|gb|EE073473.1|EE073473
genomic: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttctt ... tgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
EST: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGA TTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGAEST: gi|351053923|gb|FQ441689.1|FQ441689
genomic: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttctt ... tgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
EST: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGA TTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGAEST: gi|110384531|gb|EC948975.1|EC948975
genomic: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttctt ... tgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
EST: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGA TTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGAEST: gi|110387938|gb|EC952646.1|EC952646
genomic: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttctt ... tgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
EST: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGA TTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGAEST: gi|110728565|gb|EE104246.1|EE104246
genomic: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttctt ... tgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
EST: GCCTTANTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGA TTGGATGATTGGGTGCTATGTANGATCTATAAGAAGAAGCATGTGGGGAGA
genomic: GCCTTAGTGATTCAAGGCCACGCCCCAAGAAGCACAATGGTTCCATGAGAgtaggttctt ... tgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGA
atagattatatataatggtgatctgaccagtaactgctcgtgttttgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGAATTTTGGAAGAGAAAGAAGAAAATTTAGGTCCCCAAATACCCGTTACAA
cagtaac putative branch site (score: 2)
ttatatataatggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggttcttatcacttttagaatcaaattttctactattttctttagagtatagattatatataatggtgatctgaccagtaactgctcgtgttttgtgtttcagTTGGATGATTGGGTGCTATGTAGGATCTATAAGAAGAAGCATGTGGGGAGAATTTTGGAAGAGAAAGAAGAAAATTTAGGTCCCCAAATACCCGTTACAA
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