1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttttgtccaaaatgagttaagaattttacatggatcataattaagaagcatcagttgtgggattgtcattttgatggtcagtattctcttcatttttcagGTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTTAGATTTGGGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATT
species | Vitis vinifera |
transcript | Vv01s0026g02490.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCCTCGGGAAACAACTGGGATTACTGAGCTTGGTGGGGCTTCGGCTCAG GTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTTEST: gi|110356657|gb|EC919644.1|EC919644
genomic: ATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAGgttgtttcat ... catttttcagGTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTT
EST: ATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAG GTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTTEST: gi|161718808|gb|FC066355.1|FC066355
genomic: ATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAGgttgtttcat ... catttttcagGTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTT
EST: ATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAG GTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTTEST: gi|161712811|gb|FC062334.1|FC062334
genomic: ATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAGgttgtttcat ... catttttcagGTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTT
EST: ATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAG GTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTTEST: gi|110359018|gb|EC919806.1|EC919806
genomic: ATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAGgttgtttcat ... catttttcagGTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTT
EST: ATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAG GTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTTEST: gi|110357251|gb|EC920660.1|EC920660
genomic: ATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAGgttgtttcat ... catttttcagGTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTT
EST: ATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAG GTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTT
genomic: ATCCTCGGGAAACAACTGGGATTATTGAGCTTGGTGGGGCTTCGGCTCAGgttgtttcat ... catttttcagGTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTT
aagcatcagttgtgggattgtcattttgatggtcagtattctcttcatttttcagGTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTTAGATTTGGGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATT
ttttgat putative branch site (score: 4)
tattctcttcattttt putative PPT
ttcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgtccaaaatgagttaagaattttacatggatcataattaagaagcatcagttgtgggattgtcattttgatggtcagtattctcttcatttttcagGTAACCTTTGTTTCAAGTGAACCAGTGCCTCCTGAATTCTCACATACTCTTAGATTTGGGAATGTCACTTACAATCTCTATAGTCACAGCTTGCTTGATT
- - - - aaaatga
- - - - - - - - - - - - - tacatgg
- - - - - - - - - - - - - - - - - - - - - aagaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatggt