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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actgcacattttgatagcatttattgtagcacaatttggtttgtatacttaaaatttcagtgcatttttggatgtgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG

Basic information

species Vitis vinifera
transcript Vv01s0026g02410.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os08g06040.1 (Oryza sativa), 3'ss of exon 2
actgcacattttgatagcatttattgtagc--acaatttggtttgtatacttaaaatttcagtgcatttttggatgtgatagaatgttggctatgt----ctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG
        ||   |||   ||| ||  | |    |  ||    |  ||  |||| ||| || |  ||  |||| | | | | |  ||||  | ||     ||||||||||| ||||| |||||||| || ||||||||||| |||||  | ||||| || ||||| ||||||||| |||| || |||||  |||||||   ||| |
--aattggttgaaataagttttctttgaaccggtatcttaagcttcattgttaacattgcaat--atccttggttcttacaaa--gttgcttgtgctaaactgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGATTGTCAAGGAATCGCAGGACCGTGAACCGTCCTTACGGTGGTGTCCTGTCTGGTACTGCAG

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: LOC_Os08g33920.1 (Oryza sativa), 3'ss of exon 2
actgcacattttgatagcatttattgtagcacaatttggtttgtatacttaaaatttcagtgcatttttggatgtga-----tagaatgttggctatgt-ctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG
     ||  |||| |      ||||      | || |   || | |   |   |||||| || || |||| |  |||     || |  ||   |||| | || |||||||| ||| | || ||||| || ||||||||||| || ||  |||||||||| ||||||||||||||| | ||||| || ||| | ||||||  ||| |
--gataccgtttggttcttcatattac----cgatattacttttctctatgctatttcactggatatttgtacttgaggatttatacagtgttctattttctccagATTCCCCACTTGAGGCCTGCTGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGAGTGCTCTCTGGAACTGCAG

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G032564_T01 (Zea mays), 3'ss of exon 2
----actgcacattttgatagcatttattgtagcacaatttggt-ttgtatacttaaaatttcagtgcatttttggatgtgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG
    | |   || | | | ||  |  | || || | || || || |  | ||| ||| |||| | |||   |    |    |||     |  |||     |||||||||| ||||| |||||||| || ||||||||||| || ||  | |||||||| ||||||||||||||| | ||||| |||||  |||||||    || |
tcagattaggcagtctta-agtttgcactgcagtataagtttgtgtcatttacataatatttaactgctgctcataa----atatttcctatgcttcaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAG

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM5G820996_T01 (Zea mays), 3'ss of exon 2
actgcacattttgatagcatttattgtagcacaatttgg---tttgtatacttaaaatttcagtgcatttttggatgtgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG
|||   |||      | |||||| |  | ||   | |||   ||| | ||  | ||       |  |   |      | ||   ||  |  | || |||  |||| || ||| | |||||||| || ||||||||||| || ||  |||||||||| |||||||| |||||| ||||||| || ||  | ||||||  |||||
actatccataa-atcatcatttagttca-catggtctggtaatttctctatctgaacaggtctta-acagtcaatgctaatgctattcttcccatatctctagATCCCCCACTTGAGACCTGCCGAGTACAAGAGGTCCAGGTTGTCTAGGAACCGCAGGACTGTTAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTG

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G152573_T04 (Zea mays), 3'ss of exon 2
----actgcacattttgatagcatttattgtagcacaatttggtttgtatacttaaaatttcagtgcatttttggatgtgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG
    | |   || | | | ||        | || | || || ||     ||     |  || |    ||| |   |    |||    |   |||     |||||||||| ||||| |||||||| || ||||||||||| || ||  | |||||||  ||||||||||| ||| | ||||| |||||  |||||||   ||| |
tcagattatgcagtctta-agttcacgcgggagtataagtttgtgccattaacagcatgtttaactgattctcata---aatatcgcgaatgcttgaattgcagATTCCACACCTGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAG

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G152552_T01 (Zea mays), 3'ss of exon 2
--actgcacattttgatagcatttattgtagcacaat-ttggtttgtatacttaaaatttcagtgcatttttggatgtgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG
   ||| ||| |    |     | |    | |    | ||  | |||  | |  | |||||     | | |||  | | ||   ||  |  | || | | ||||| |||||| | || ||||| || ||||| ||||| || || ||||||| ||| ||||||||||||||| ||||||| || ||  | ||||||  |||||
tacctgaacaatgccctcagtgtcaccaaaactgggtattcatctgt-cattggatatttccacctaatattg--tttaatgctattgtttccatatttccagATCCCTCACTTGAGGCCTGCTGAGTACAAAAGGTCCAGGTTGCCTAGGAGCCGCAGGACTGTGAACCGTCCTTATGGTGGAGTACTCTCTGGAATTGCTG

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G11920.1 (Glycine max), 3'ss of exon 2
actgcacattttgatagcatttattgtagcacaatttggtttgtatactta---aaatttcagtgcatttttggatgtgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG
     | |||||  | || ||    |  | ||| | || ||  | |  ||    ||| ||   |   |||||  |  |  ||   | |     |    |||||||||| ||| | || |||||||| |||||||| || || ||||| || |||||||||||||| |||||||| ||||| || || ||||||||| ||||||
--cagatatttttttggctttatgcgagggacattatgtttcctgtgtttggataaaattatatatctttttcaac-tactaatttatgcttgacaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGATCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGCGGAGTTTTGTCTGGAAGTGCTG

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G05740.1 (Glycine max), 3'ss of exon 2
actgcacattttgatagcatttattgtagcacaatttggtttgtatactt----aaaatttcagtgcatttttggatgtgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG
 |   |  ||||  | || ||   ||  | ||| | || ||  | |  ||    |||||| ||   | ||||   ||   |    ||| | |  |    |||||||||| ||| | || |||||||| ||||||||||| || ||||| || |||||||||||||| |||||||| ||||| || || || |||||| |||| |
-ccagatgttttttt-gctttacgtgagggacattatgtttcctgtgtttggataaaattacatatctttttcaaattctaatttatgcttg--acaattgcagATTCCACACTTGAGGCCTGCAGAGTACAAGAGGTCAAGGTTACCCAGAAACCGTAGGACTGTCAACCGTGCATATGGTGGAGTTTTATCTGGAAGTGCCG

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G41280.1 (Glycine max), 3'ss of exon 2
---actgcacattttgatagcatttattgtagcacaatttggtttgtatacttaaaatttcagtgcatttttggatg-tgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG
        |||  | |||     ||  | |          || || | || | ||   | ||  | ||      ||| | ||  |   ||||| ||   |||||||||| ||  |||| ||  ||||||| ||||| || || ||||| |  ||||| ||||||||||||||||| ||||| ||||||||||||||  ||||||
aggttcctacaactagatttttctttctatgattggtaaaggattatgta-tgaatgatacacggtataacataatggttattaatgcttggcaat---tgcagATTCCACATTTAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTG

upper sequence: Vv01s0026g02410.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA18G14980.1 (Glycine max), 3'ss of exon 2
---actgcacattttgatagcatttattgtagcacaatttggtttgtatacttaaaatttcagtgcatttttggatg-tgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG
    || ||  |  |  |  | ||   ||||    ||     | |||| | | ||   | ||  | || |    ||| | ||  |    |||  ||   |||||||||| ||  |||| || ||||| || || || || || ||||  || ||||| ||||||||||||||||| ||||| ||||||||||||||  ||||||
gttcctacaactagttttttctttctatgtacggtaaaggattatgta-agtgaatgatgcatggtatatcataatggttattaatgagtggaaat---tgcagATTCCACATTTAAGGCCAGCAGAGTATAATAGATCAAGGTTACACAGAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110715774|gb|EE094207.1|EE094207
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|349827592|gb|FQ422460.1|FQ422460
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|27582239|gb|CB004934.1|CB004934
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|71871363|gb|DT020418.1|DT020418
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|110707256|gb|EE083500.1|EE083500
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|110695694|gb|EE074007.1|EE074007
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|110703427|gb|EE080263.1|EE080263
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|161716131|gb|FC066487.1|FC066487
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|110691194|gb|EE069016.1|EE069016
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|37187841|gb|CF607194.1|CF607194
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|30134974|gb|CB920312.1|CB920312
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|352785847|gb|FQ475850.1|FQ475850
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|110419706|gb|EC985955.1|EC985955
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|71875792|gb|DT024847.1|DT024847
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|71867822|gb|DT016877.1|DT016877
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|110400132|gb|EC966677.1|EC966677
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|71866217|gb|DT015272.1|DT015272
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|110732670|gb|EE108161.1|EE108161
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|349824962|gb|FQ406534.1|FQ406534
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|110365512|gb|EC928620.1|EC928620
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|71866026|gb|DT015081.1|DT015081
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|352789622|gb|FQ476220.1|FQ476220
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
EST: gi|110717929|gb|EE094214.1|EE094214
EST:     AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGG                         ATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC
genomic: AGAGGGCAAACGGTCCTAAGTGTCCTGTAACTGGAAAGAGGATTCAAGGGgtatgcgatt ... atgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttaaaatttcagtgcatttttggatgtgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG
     aaaatttca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actgcacattttgatagcatttattgtagcacaatttggtttgtatacttaaaatttcagtgcatttttggatgtgatagaatgttggctatgtctgcagATTCCTCACCTAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
-ctgcaca
- - - - - - - - - - - - tgtagca
- - - - - - - - - - - - - - - - - - tggtttg
- - - - - - - - - - - - - - - - - - - - - - - -cttaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggc