1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atggtcacaggattagttaataattatgaggcttgtgttatgtagcctttctaagttgaaagtgggcaacttttacaatcagaaatgatgcttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAGAGCTATTTGGGGACCCTTAAACAGGACTATCATAAGTGCTGGTGAAGA
species | Vitis vinifera |
transcript | Vv01s0011g06630.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTGACTTCTGCAATTCATGTCAAACGCACTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351053113|gb|FQ455570.1|FQ455570
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGATGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351045922|gb|FQ441305.1|FQ441305
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGATGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|161715917|gb|FC068743.1|FC068743
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351037979|gb|FQ465217.1|FQ465217
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGATGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351049149|gb|FQ449871.1|FQ449871
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGATGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351048997|gb|FQ449840.1|FQ449840
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGATGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351039814|gb|FQ464852.1|FQ464852
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGATGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351048315|gb|FQ449407.1|FQ449407
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCCCGCGATCCCTCACAGC AGATGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|161714768|gb|FC063928.1|FC063928
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351035651|gb|FQ463496.1|FQ463496
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGATGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351025059|gb|FQ433476.1|FQ433476
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|349811971|gb|FQ410768.1|FQ410768
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351036544|gb|FQ457257.1|FQ457257
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351055042|gb|FQ440381.1|FQ440381
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGTTCGCGATCCCTCACAGC AGATGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|161719546|gb|FC067966.1|FC067966
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351012497|gb|FQ430061.1|FQ430061
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351040625|gb|FQ438169.1|FQ438169
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351048235|gb|FQ442205.1|FQ442205
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGATGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|110411322|gb|EC977030.1|EC977030
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: GCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351015244|gb|FQ445528.1|FQ445528
genomic: GCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|349831103|gb|FQ420773.1|FQ420773
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|110369193|gb|EC933345.1|EC933345
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351029364|gb|FQ436758.1|FQ436758
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|349810075|gb|FQ401521.1|FQ401521
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: TCAAGCGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351012844|gb|FQ430407.1|FQ430407
genomic: TCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351053994|gb|FQ441760.1|FQ441760
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGATGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAEST: gi|351055014|gb|FQ440353.1|FQ440353
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
EST: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGC AGATGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
genomic: ATTGACTTCTGCAATTCATGTCAAACGCATTGCTCGCGATCCCTCACAGCgtaattttta ... cttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACA
cctttctaagttgaaagtgggcaacttttacaatcagaaatgatgcttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAGAGCTATTTGGGGACCCTTAAACAGGACTATCATAAGTGCTGGTGAAGA
tgcttttttc CT-rich tract
ttttacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggtcacaggattagttaataattatgaggcttgtgttatgtagcctttctaagttgaaagtgggcaacttttacaatcagaaatgatgcttttttcagAGACGGCTGAGTCTGCGCTTGTCATCAAGGGCCCTCAAGGAAGGATAAACAGAGCTATTTGGGGACCCTTAAACAGGACTATCATAAGTGCTGGTGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaga